View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5347_low_17 (Length: 279)
Name: NF5347_low_17
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 7656944 - 7656685
Alignment:
| Q |
1 |
tgaagatattatcatagataatagcagcaaatgctgcaccaataaatgggccgacccaatagacccaatgatgagtccatgtccaactaacaacagcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7656944 |
tgaagatattatcatagataatagcagcaaatgctgcaccaataaatgggccgacccaatagacccaatgatgagtccatgtccaactaacaacagcagg |
7656845 |
T |
|
| Q |
101 |
cccaaaagaaacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaatgataccaattgcaattggagcaataatt |
200 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
7656844 |
cccaaatgacacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaataacaccaattgcaattggagcaataatt |
7656745 |
T |
|
| Q |
201 |
cctacattcccnnnnnnnggatctactgcggttgcataaactgtgtataccaatccaaat |
260 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7656744 |
cctatattccctttttttggatctactgctgttgcataaactgtgtataccaatccaaat |
7656685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 41417970 - 41418082
Alignment:
| Q |
90 |
acaacagcaggcccaaaagaaacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaatgataccaattgcaattg |
189 |
Q |
| |
|
|||||||||||||| || || || ||||| ||||||||||| || || ||||||||| | || || || |||||||| |||| |||||| ||||||| |
|
|
| T |
41417970 |
acaacagcaggcccgaatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattg |
41418069 |
T |
|
| Q |
190 |
gagcaataattcc |
202 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
41418070 |
gtgcaataattcc |
41418082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 23340505 - 23340357
Alignment:
| Q |
48 |
gggccgacccaatagacccaatgatgagtccatgtccaactaacaacagcaggcccaaaagaaacagctggattcatggatgcaccatcaaatgctccac |
147 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
23340505 |
gggccgacccaatagacccaatgattagcccatgtccagctaacaacagcaggcccaaaagaaactgctgggttcatggatgcaccatcaaatgcaccac |
23340406 |
T |
|
| Q |
148 |
cagctaagatatttgcaccaacaatgataccaattgcaattggagcaat |
196 |
Q |
| |
|
| |||||||| || || ||||| |||| ||||||||||||||||||||| |
|
|
| T |
23340405 |
ctgctaagatgttagctccaactatgaaaccaattgcaattggagcaat |
23340357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 52102182 - 52102441
Alignment:
| Q |
1 |
tgaagatattatcatagataatagcagcaaatgctgcaccaataaatgggccgacccaatagacccaatgatgagtccatgtccaactaacaacagcagg |
100 |
Q |
| |
|
|||||||||||| ||||| ||| |||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
52102182 |
tgaagatattattatagagaatggcagcagtagctgaaccaatgaatgggccaacccaatagacccaatgatgagtccatgttccactaacaacagcagg |
52102281 |
T |
|
| Q |
101 |
cccaaaagaaacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaatgataccaattgcaattggagcaataatt |
200 |
Q |
| |
|
||| ||||| |||||||| ||||| |||||||||||||| | |||||| | |||||||||||||| ||||| ||||||||| | ||| || | || |
|
|
| T |
52102282 |
cccgaaagacacagctgggttcattgatgcaccatcaaaaacaccaccaaccaagatatttgcacccacaatacaaccaattgctaatggtgctacaaca |
52102381 |
T |
|
| Q |
201 |
cctacattcccnnnnnnnggatctactgcggttgcataaactgtgtataccaatccaaat |
260 |
Q |
| |
|
|| |||||||| || |||| ||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
52102382 |
ccaacattccctctctttgggtctattgctgttgcataaactgtatatactaatccaaat |
52102441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 8316189 - 8316232
Alignment:
| Q |
38 |
accaataaatgggccgacccaatagacccaatgatgagtccatg |
81 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8316189 |
accaatgaatgggccaacccaatagacccaatgatgagtccatg |
8316232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 24833995 - 24833931
Alignment:
| Q |
120 |
ttcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaatgataccaattgc |
184 |
Q |
| |
|
|||||| |||| |||||||||| |||||| | | |||||||||||||||||||| |||||||| |
|
|
| T |
24833995 |
ttcatgcatgctccatcaaatggaccaccaacaaggatatttgcaccaacaatgagtccaattgc |
24833931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 43585659 - 43585611
Alignment:
| Q |
148 |
cagctaagatatttgcaccaacaatgataccaattgcaattggagcaat |
196 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
43585659 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaat |
43585611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University