View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_3 (Length: 514)
Name: NF5347_low_3
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Original strand, 23007646 - 23008134
Alignment:
| Q |
10 |
aagaatataaagaagtcaaccacctcaaagaccaaaaagagttcaagggtaattattttatagttttgacaaaatacgtcttttatgtttcactatccta |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23007646 |
aagaaaataaagaagtcaaccacctcaaagaccaaaaagagttcaagggtaattattttatagttttgacaaaatacttcttttatgtttcactatccta |
23007745 |
T |
|
| Q |
110 |
gtttttgaacttttcttcatgctcaaatcatccagtccaaaggtgcaaaaggtctagaagaaaagaaattgaatctgtcgaaagtctagtgggaatgtcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23007746 |
gtttttgaacttttcttcatgctcaaatcatccagtccaaaggtgcaaaaggtctagaagaaaagaaattgaatctgtcgaaagtctagtgggaatgtcg |
23007845 |
T |
|
| Q |
210 |
gttcaccaaaccgataaaggcaaagttgtagctaatgcctcttctggtttaggtagaagatggaagatccaaagtctaatgagagtaatcctggtaatac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23007846 |
gttcaccaaaccgataaaggcaaagttgtagctaatgcctcttctggtttaggtagaagatggaagatccaaagtctaatgagagtaatcctggtaatac |
23007945 |
T |
|
| Q |
310 |
cccaatttcaactccatcccaaaaatccaaaacaaacaatctcaacaaccagaaagtgctaattctagtcctgtaggtgataaggtaaatgtttaacctt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23007946 |
cccaatttcaactccatcccaaaaatccaaaacaaacaatctcaacaaccagaaagtgctaactctagtcctgtaggtgataaggtaaatgtttaacctt |
23008045 |
T |
|
| Q |
410 |
cattacaataccaaaatactatgattattttaattggctaaacctggtttgttcgctcgtatgatacttcttcaactgctggacaacat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23008046 |
cattacaataccaaaatactatgattattttaattggctaaacctggtttgttcgctcgtatgatacttcttcaactgctggacaacat |
23008134 |
T |
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