View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_30 (Length: 228)
Name: NF5347_low_30
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12507960 - 12507752
Alignment:
| Q |
1 |
acatataccatatatattcgacaggacggacacaaattatcatattattcgtgcttgtggacacttatttacatttctatat--gtttatttattgaagt |
98 |
Q |
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| T |
12507960 |
acatataccatatatattcgacaggacggacacaaattatcatattattcgtgcttgtggacactcatttacatttctatataagtttatttattgaagt |
12507861 |
T |
|
| Q |
99 |
gctctctcacatggtctctcatcttttggaagttgacacactccatgttgacttcatgagactgtagttggtttttgttctctctttttatttttccatt |
198 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12507860 |
gctctctcacatggtccctcatcttttggaagttgacacactccatgctgactgcatgagactgtagttggtttttgttttctctttttatttttccatt |
12507761 |
T |
|
| Q |
199 |
gcaccaaac |
207 |
Q |
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||||||||| |
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| T |
12507760 |
gcaccaaac |
12507752 |
T |
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