View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5347_low_5 (Length: 442)
Name: NF5347_low_5
Description: NF5347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5347_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 49583885 - 49584296
Alignment:
| Q |
18 |
agatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagcttttgtttcgtctgatgc |
117 |
Q |
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| T |
49583885 |
agatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagcttttgtttcgtctgatac |
49583984 |
T |
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| Q |
118 |
cgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgattgttactccgtccactgt |
217 |
Q |
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| T |
49583985 |
cgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgattgttactccgtccattgt |
49584084 |
T |
|
| Q |
218 |
catggattggatctatacttattgatttgtcttccatacttattatttgctatgttcaattgattggtaggtgtcagagacacttgcagaaaggaacatt |
317 |
Q |
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| T |
49584085 |
catggattggatctatacttattgatttgtcttccatactta----ttgctatgttcaattgattggtaggtgtcagagacacttgcagagaggaacatt |
49584180 |
T |
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| Q |
318 |
agtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggnnnnnnngatcttatatgcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49584181 |
agtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggaaaaaaagatcttatatgcc |
49584280 |
T |
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| Q |
418 |
cccatgttgatgatgt |
433 |
Q |
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| T |
49584281 |
cccatgttgatgatgt |
49584296 |
T |
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