View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5348-Insertion-1 (Length: 1060)
Name: NF5348-Insertion-1
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348-Insertion-1 |
 | |
|
| [»] scaffold0603 (1 HSPs) |
| | |
|
| [»] scaffold0267 (2 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 856; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 7 - 1055
Target Start/End: Complemental strand, 11497026 - 11495986
Alignment:
| Q |
7 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11497026 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
11496927 |
T |
|
| Q |
107 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496926 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
11496827 |
T |
|
| Q |
207 |
gtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
306 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496826 |
gtatcaccgaggttcccaaatctattggaaatttgttatacctccggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
11496727 |
T |
|
| Q |
307 |
gctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacatt |
406 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11496726 |
gctttacaatctgcagttcttgttattggcaggctgtagaaggctcgttgaattgcccgaggacataggagaattggtcaatctacagtgccttgacatt |
11496627 |
T |
|
| Q |
407 |
agtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496626 |
agtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattga |
11496527 |
T |
|
| Q |
507 |
tggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaattt |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11496526 |
tggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcttttcaagccaattt |
11496427 |
T |
|
| Q |
607 |
gaagatgaaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcga |
706 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496426 |
gaagatgaaagaacaaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcga |
11496327 |
T |
|
| Q |
707 |
ccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtattta |
806 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11496326 |
ccctcaacaaatttgaaaagtctcaccatcaaaggctatggtggatacagcattccaaattggttgggtga-ttttttatttggcaacatggtgtattta |
11496228 |
T |
|
| Q |
807 |
agggatctcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattgattcgatgctttcaataaaga |
906 |
Q |
| |
|
| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11496227 |
a-ggatctcgaatttcgataagtgtatatggc-ttccaccccttggacaattgggaaatttg-aaagaactcattattgattcgatgctttcaataaaga |
11496131 |
T |
|
| Q |
907 |
gtgttagcacagagttctacggaagtgatgggttcctcctttcatttcaaccatttccctccctggaggactctacacttggagggatatggcagaatgg |
1006 |
Q |
| |
|
||||| ||||||||||||||||||||||| | | |||| |||||||||||||||||||||| |||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
11496130 |
gtgttggcacagagttctacggaagtgatag--ttctcc-ttcatttcaaccatttccctccttgga-gactctacactttga-ggatatgccagaatgg |
11496036 |
T |
|
| Q |
1007 |
ga-gaatggaacttgaattgggaggtac-acgac-aattttcctagtctaaa |
1055 |
Q |
| |
|
|| ||||||||||| | | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
11496035 |
gaggaatggaacttca--ttggaggtacaacgacaaattttcctagtctaaa |
11495986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 983
Target Start/End: Original strand, 5966529 - 5967487
Alignment:
| Q |
17 |
tcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgttacaagaacaat |
116 |
Q |
| |
|
||||||| || ||| | |||||| ||| |||||||||||| | |||||| ||||||||| | ||||||||||||||||| |||| ||| |||||| || |
|
|
| T |
5966529 |
tcatacaatacaggtacatatgactcatatgataaatttggtcaattgtatggattaaaagatctacgtacctttctagcattaccattagaagaacgat |
5966628 |
T |
|
| Q |
117 |
cgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactga |
216 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||| |||| ||| ||||||||| |||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
5966629 |
tgcctcgttgtttgctatcaaacaaggtagtacatgagttgctgccaacaatgaaacaattgcgtgtgttgtctttgacaaactacaaaagcatcactga |
5966728 |
T |
|
| Q |
217 |
ggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
5966729 |
ggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaagattgaaaagttgcctagtgaaacatgcaagctttacaat |
5966828 |
T |
|
| Q |
317 |
ctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacattagtgacactg |
416 |
Q |
| |
|
|| ||||||||||| ||| ||||||||| || |||| ||||||||| |||||||| ||| ||||||| | | | | ||||||||||||||||||||| |
|
|
| T |
5966829 |
ctgcagttcttgttgttgtcaggctgtaaaaggctcactgaattgccagaggacatgggaaaattggttagtttgcgccgtcttgacattagtgacactg |
5966928 |
T |
|
| Q |
417 |
cattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattgatggtagccga |
516 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||| | |||||||| ||||| ||||||| |||| || ||||||||||||||| | || |
|
|
| T |
5966929 |
cattgagggagatgcccacacaaatagccaaactagaaaatcttgaaactttgtctgactttcttgtcagcaaacatactggtggattgatggttggaga |
5967028 |
T |
|
| Q |
517 |
actaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatgaaa |
616 |
Q |
| |
|
|||||||| | ||| | ||| ||||||||||||| |||||||||||||||||||| ||| |||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
5967029 |
gctaggaaagtatcctcttctaaatggaaaactttccatctcacaactacaaaatgtcaataacccttttgaagcagttcaagccaatatgaagatgaaa |
5967128 |
T |
|
| Q |
617 |
gaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaa |
716 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||| || | |||||||||| |||||||||||||||||| |
|
|
| T |
5967129 |
gaacgaatagacaagttagttttagaatgggcttgtggtagtacttgttcagattcacaaattcagagtgttgtacttgaacatttgcgaccctcaacaa |
5967228 |
T |
|
| Q |
717 |
atttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtatttaagggatctcg |
816 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| || | ||| |||||||| ||||| |||| ||||||| ||||||||| |||||||| |
|
|
| T |
5967229 |
atttgaaaagtctcaccatcaaaggctatgggggaatcaactttccgaattggttaggtga-ttcgttatttaccaacatgatgtatttaa-ggatctcg |
5967326 |
T |
|
| Q |
817 |
aattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattgattcgatgctttcaataaagagtgttagcac |
916 |
Q |
| |
|
|||| || | ||| |||||| |||||||||||||||||||||| ||| || ||||||||||||||||| ||||| || ||| ||| || | || |
|
|
| T |
5967327 |
aattgtggtgattgtttatggc-ttccaccccttggacaattgggtaatctg-aaagaactcattattgaagggatgcaatccatacagataattggtac |
5967424 |
T |
|
| Q |
917 |
agagttctacggaagtgatgggttcctcctttcatttcaaccatttccctccctggaggactctaca |
983 |
Q |
| |
|
|||||||| ||||||||| | | |||| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
5967425 |
tgagttctatggaagtgatag--ttctcc-ttcatttcaaccatttccctccttgga-gactctaca |
5967487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 886
Target Start/End: Original strand, 2920231 - 2921106
Alignment:
| Q |
7 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
106 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||| ||| | |||||||||||| |||| | | || |||| ||| ||||||||||||||| | || ||| |
|
|
| T |
2920231 |
acatactttgtcatacaatagagagagatatgagtcatttaataaatttgataaattgtttggttttaaagatttgcgtacctttctagcattgccatta |
2920330 |
T |
|
| Q |
107 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
206 |
Q |
| |
|
|| | ||||| ||||||||||| ||| | |||||| ||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2920331 |
cagggacaatttcctctttgtttgctagcgaacaaggtagtacatgacttgctgccaacaatgaaacagttacgtgtgttgtctttgtcaaactacaaga |
2920430 |
T |
|
| Q |
207 |
gtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||| |||||||||| | |
|
|
| T |
2920431 |
gtatcactgaggttcccaactctattggaaatttgttatacctgcggtacttaaatctttctcatactgagattgaaaggctgccttctgaaacatgcca |
2920530 |
T |
|
| Q |
307 |
gctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacatt |
406 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||| |||| || | || |||||||||| |||||||| ||| ||||||| |||||| |||||| || |
|
|
| T |
2920531 |
gctttacaatcttcagttcttgttgttgtcaggatgtaaaaggttcattgaattgccagaggacatgggaaaattggttaatctatgccaccttgacgtt |
2920630 |
T |
|
| Q |
407 |
agtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattga |
506 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||| ||| || ||||||| || |||||||| | ||||||||||| |||| |||||||||||||| |
|
|
| T |
2920631 |
agtgacactgcattgagggagatgcccgtacagatagctaaactacaaaatctgcatactttgtctgattttgttgtcagcaaacataatggtggattga |
2920730 |
T |
|
| Q |
507 |
tggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaattt |
606 |
Q |
| |
|
||| || || ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2920731 |
aggttgcagagctaggaaaatttccccacctaaatggaaaaatttccatctcacaactacaaaatgttaaggacccctctgaagcttttcaagccaattt |
2920830 |
T |
|
| Q |
607 |
gaagatgaaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcga |
706 |
Q |
| |
|
|||||||||||| ||||| || | ||| ||||||||||||| ||||||||||||||||| || ||| |||||||| | | |||||||||| |||||| | |
|
|
| T |
2920831 |
gaagatgaaagagagaatacacgacttaactttagaatgggactgtggtagtactttttctgaatcagaagttcaatgtgttgtacttgaacatttgcaa |
2920930 |
T |
|
| Q |
707 |
ccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtattta |
806 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2920931 |
ccttcaacaaatttgaaaagtctcaccatcaaaggctatggtggaatcagctttccaaattggttgggtga-tttttcatttagcaacatggtgtattta |
2921029 |
T |
|
| Q |
807 |
agggatctcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattga |
886 |
Q |
| |
|
| ||||||| |||| ||| || ||| |||||| ||||||| || || |||||| | ||| || ||||||||||| ||||| |
|
|
| T |
2921030 |
a-ggatctcaaattgtgataattgtttatggc-ttccaccgctcggtcaattgagtaatctg-aaagaactcataattga |
2921106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 886
Target Start/End: Complemental strand, 11490553 - 11489676
Alignment:
| Q |
7 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
106 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||| ||| | |||||||||||| |||||| | |||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
11490553 |
acataatttatcatacaatagagggctatatgactcatttaataaatttgataaattgtatgcagtaaaaggtctacgtacctttctagcattaccatta |
11490454 |
T |
|
| Q |
107 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
206 |
Q |
| |
|
||| ||||| |||| ||||||| |||| |||||| ||||||||| |||| ||| ||||||||| || ||||| ||||| ||||||||||||| || |
|
|
| T |
11490453 |
caaaaacaactgcctttttgtttgttatcgaacaaggtagtacatgacttgctgccaacaatgaaacaattacgtgttttgtccttgtcaaactacagga |
11490354 |
T |
|
| Q |
207 |
gtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
306 |
Q |
| |
|
||||||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||| |
|
|
| T |
11490353 |
gtatcaccgagattcccaactctattgaaaatttgttatgcctgcggtacttaaatctttcccacactaagattgaaaggttgccttctgcaacatgcaa |
11490254 |
T |
|
| Q |
307 |
gctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacatt |
406 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| || ||||| || || ||||||| ||||| | ||||||||| |
|
|
| T |
11490253 |
gctttacaatctgcagttcttgttgttggcaggctgtagaaagctcattgaatttccggaggatatggggaaattggttaatctccgccaccttgacatt |
11490154 |
T |
|
| Q |
407 |
agtgaca---ctgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggat |
503 |
Q |
| |
|
||||||| |||||||| |||||||||| | ||||||||||||| |||||||| |||| |||||||| ||||||||||| | || | |||| ||||| |
|
|
| T |
11490153 |
agtgacagtactgcattgagggagatgcctgtacaaatagccaaactagaaaatttccatactttgtcggactttgttgtcggcaagcagaatgatggat |
11490054 |
T |
|
| Q |
504 |
tgatggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaa |
603 |
Q |
| |
|
||| |||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
11490053 |
tgaaggtagcggagct-ggaaaatttccccacctacatggaaaactttctatctcacagctacaaaatgttaatgacccctttgaagcagatcaagccaa |
11489955 |
T |
|
| Q |
604 |
tttgaagatgaaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttg |
703 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| | |||||||||| ||||| |
|
|
| T |
11489954 |
gattaagatgaaagaacgaatagaagagttagctttagaatgggattgtggtagtacttttccagattcacaaactcaaagtgttgtacttgaacatttg |
11489855 |
T |
|
| Q |
704 |
cgaccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtat |
803 |
Q |
| |
|
| ||| ||||||||||||||||| ||| |||| |||||||| ||||| ||| | |||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
11489854 |
caaccttcaacaaatttgaaaagtctcgccataaaaggctactgtggagacaactttccaaattggatgggtga-ttttttatttagcaacatggtgtac |
11489756 |
T |
|
| Q |
804 |
ttaagggatctcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattga |
886 |
Q |
| |
|
|||| |||||||||||| |||| | ||| |||||| |||||||||||||| ||||||| ||| |||||| | ||||||||||| |
|
|
| T |
11489755 |
ttaa-ggatctcgaattgtgacgattgtttatggc-ttccaccccttggaaaattgggtaatctgaaaa-acctcattattga |
11489676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 5052597 - 5052897
Alignment:
| Q |
10 |
taatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgttacaa |
109 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||| ||| | |||||||||||| |||||| | |||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
5052597 |
taatttatcatacaatagagggctatatgactcatttaataaatttgataaattgtatgcagtaaaaggtctacgtacctttctagcattaccattacaa |
5052696 |
T |
|
| Q |
110 |
gaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagta |
209 |
Q |
| |
|
||||| | | ||||||| ||||||||||| ||||||||| |||| ||| ||||||||| || || |||||||||||||||||||||| ||||| |
|
|
| T |
5052697 |
aaacaactacatttttgtttgttatcaaacaaggtagtacatgacttgctgccaacaatgaaacaattacgcgtgttgtctttgtcaaactacaggagta |
5052796 |
T |
|
| Q |
210 |
tcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagct |
309 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| |
|
|
| T |
5052797 |
tcaccgaggttcccaactctattgaaaatttgttatacctgaggtacttaaatctttcccacactaagattgaaaggttgccttctgcaacatgcaagct |
5052896 |
T |
|
| Q |
310 |
t |
310 |
Q |
| |
|
| |
|
|
| T |
5052897 |
t |
5052897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 521 - 751
Target Start/End: Complemental strand, 7489949 - 7489719
Alignment:
| Q |
521 |
ggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatgaaagaac |
620 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7489949 |
ggaaaatttccccacctacagggaaaactttccatctcactgctacaaaatgttaatagcccctttgaagtttttcaagccaatatgaagatgaaagaac |
7489850 |
T |
|
| Q |
621 |
gaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaaattt |
720 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||| |||||||||||| | ||| || ||||||| | |||||||||| ||||||||||||| |||| ||| |
|
|
| T |
7489849 |
aaatagatgagttagctttaaaatgggactgtggcagtactttttcaaactcataaattcaaagtgttgtacttgaatatttgcgaccctcgacaagttt |
7489750 |
T |
|
| Q |
721 |
gaaaagcctcaccatcaaaggctatggtgga |
751 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| |
|
|
| T |
7489749 |
gaaaagtctcaccatcgaaggctatggtgga |
7489719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 167 - 322
Target Start/End: Complemental strand, 4079393 - 4079238
Alignment:
| Q |
167 |
atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt |
266 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| | | |||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| | | |
|
|
| T |
4079393 |
atgaaacagttacatgtgttgtctctgtcaaactaccataatatcactgagttgcccaactctattggaaatttgatatacctgcgatacttaaatgtct |
4079294 |
T |
|
| Q |
267 |
ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag |
322 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4079293 |
ctcacactagtattgaaaggttgccttctgaaacatgcaagctttacaatctacag |
4079238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 274 - 462
Target Start/End: Complemental strand, 7490174 - 7489986
Alignment:
| Q |
274 |
taatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacata |
373 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||| |||||||| || |||| ||||||||||| |||| ||||||| || |||||||| |
|
|
| T |
7490174 |
taatattgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttattgttggtaggctgtagaaggctcattgaatttccggaggacatt |
7490075 |
T |
|
| Q |
374 |
ggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctcca |
462 |
Q |
| |
|
||| ||||||| ||||| || ||||| |||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
7490074 |
ggaaaattggttaatctgcatcaccttgatgttagcgacactgcattgagggagatgcctgtacaaatagccaaactagaaaatctcca |
7489986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 167 - 322
Target Start/End: Complemental strand, 4059784 - 4059629
Alignment:
| Q |
167 |
atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt |
266 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| | | |||||||| | | ||||| ||||||||||||||| |||||||||| ||||||||| | | |
|
|
| T |
4059784 |
atgaaacagttacatgtgttgtctctgtcaaactaccataatatcactgcgttgcccaactctattggaaatttgatatacctgcgatacttaaatgtct |
4059685 |
T |
|
| Q |
267 |
ctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag |
322 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4059684 |
ctcacactagtattgaaaggttgccttctgaaacatgcaagctttacaatctacag |
4059629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 186 - 318
Target Start/End: Original strand, 4130837 - 4130969
Alignment:
| Q |
186 |
tgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaag |
285 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| | ||| || |
|
|
| T |
4130837 |
tgtctttgtcaaactacaagaatatcactgagtttcccaattctattggaaatttgatatacctgcgatacttaaatctctctcacactgagattagaat |
4130936 |
T |
|
| Q |
286 |
attgccttatgaaacatgcaagctttacaatct |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
4130937 |
gttgcccgctgaaacatgcaagctttacaatct |
4130969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 151 - 322
Target Start/End: Complemental strand, 4114275 - 4114102
Alignment:
| Q |
151 |
tgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaa--gagtatcactgaggttcccaaatctattggaaatttgttatacc |
248 |
Q |
| |
|
|||| |||| ||| ||||||||||||| |||||||||||| | ||||| |||| || ||||||| || | ||||| ||||||||||||||| |||||| |
|
|
| T |
4114275 |
tgacttgctgccacaaatgaaacagttacgtgtgttgtctctatcaaattacacaggaatatcactaagttgcccaactctattggaaatttgatatacc |
4114176 |
T |
|
| Q |
249 |
tgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag |
322 |
Q |
| |
|
|||| ||||||||| | |||| ||||| |||| |||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
4114175 |
tgcgatacttaaatgtctctcgcactagtattcaaaggttgccttctgaaacatgcaagctttgcaatctacag |
4114102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 7491725 - 7491565
Alignment:
| Q |
86 |
acctttctagcactaccgttacaagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgt |
185 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||||||||| || |||||| | ||||||||| |||| || ||||||||| | | | ||| |
|
|
| T |
7491725 |
acctttctagcattaccattacaagaacaattgcctctttgttttctgtcaaaccgggtggtacatgacttgctgcccacaatgaaacaactacttctgt |
7491626 |
T |
|
| Q |
186 |
tgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttata |
246 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
7491625 |
tgtcattgtcaaactacaaaagtatcaccgaggttcgcaactctattggaaatttgttata |
7491565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 4091464 - 4091370
Alignment:
| Q |
224 |
aaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatct |
318 |
Q |
| |
|
||||||||||||| |||| ||||||| || ||||||||||| ||| |||||| |||| ||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
4091464 |
aaatctattggaagtttgatatacctacgatacttaaatctctctgacactatgattggaaggttgccctctgaaacatgcaagctttacaatct |
4091370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 910839 - 910730
Alignment:
| Q |
209 |
atcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagc |
308 |
Q |
| |
|
||||||||| | ||| |||||||||| |||||| |||||||||| ||||| ||||| ||| ||||| |||||||| ||||||| || ||||||||||| |
|
|
| T |
910839 |
atcactgagttgcccgaatctattgggaatttgatatacctgcgatacttgaatctctcttacactgggattgaaaggttgccttctgcaacatgcaagc |
910740 |
T |
|
| Q |
309 |
tttacaatct |
318 |
Q |
| |
|
|||| ||||| |
|
|
| T |
910739 |
tttaaaatct |
910730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 669 - 775
Target Start/End: Original strand, 4131317 - 4131423
Alignment:
| Q |
669 |
attcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattg |
768 |
Q |
| |
|
|||||||| | ||||| | |||||||||| | |||| || || ||||||||||| || ||||||||||| |||||||||||| ||| | ||||||||| |
|
|
| T |
4131317 |
attcacaaatacaaagtggtgtacttgaacaattgcagccatcgacaaatttgaagagtctcaccatcaatggctatggtggaaacaactttccaaattg |
4131416 |
T |
|
| Q |
769 |
gttgggt |
775 |
Q |
| |
|
||||||| |
|
|
| T |
4131417 |
gttgggt |
4131423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 3886670 - 3886743
Alignment:
| Q |
536 |
ctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaa |
609 |
Q |
| |
|
||||| || |||||||| || ||| ||||||||||||||| ||| |||| |||||| |||| |||||||||||| |
|
|
| T |
3886670 |
ctacaaggtaaactttccatttcaaaactacaaaatgttactgatccctttgaagcttttcgagccaatttgaa |
3886743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 4091679 - 4091632
Alignment:
| Q |
12 |
atttgtcatacactagagggatatatgattcacatgataaatttgata |
59 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
4091679 |
atttgtcatacaatagagggatatatgactcgtatgataaatttgata |
4091632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 50 - 1009
Target Start/End: Original strand, 17312491 - 17313435
Alignment:
| Q |
50 |
aaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgttacaagaacaatcgcctctttgtttactatcaaacaagaccgtac |
149 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||||||||||||||| | || |||||| ||||| |||| ||||||| ||||||||||| ||| |
|
|
| T |
17312491 |
aaatttgataaattgtatagagtaaaaggtctacgtacctttctagcatttccattacaaaaacaacggcctttttgtttgttatcaaacaaggtagtaa |
17312590 |
T |
|
| Q |
150 |
atgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacct |
249 |
Q |
| |
|
||||| |||| || ||||||||| || |||| ||||||||||||||||||||||||||||| | ||||||| || ||||||||||| ||||| | ||| |
|
|
| T |
17312591 |
atgacttgctgccgacaatgaaacaattacgtgcgttgtctttgtcaaactacaagagtatcattaaggttccgaagtctattggaaaattgtttttcct |
17312690 |
T |
|
| Q |
250 |
gcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaag |
349 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||||||| ||||| |||| || | |
|
|
| T |
17312691 |
gcggtacttaaatgtttctcacactaagattggaaggttgccttctgaaacatgcaagctttacaatctgcagttcttg------gcaggttgtacaagg |
17312784 |
T |
|
| Q |
350 |
ctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccgcacaaatagccaaat |
449 |
Q |
| |
|
||| |||||||||| || |||||||||||||||||||||| || ||||| |||||||||||||||||| ||| |||||| ||||||| |||||| |
|
|
| T |
17312785 |
ctcattgaattgccagaccacataggagaattggtcaatctgtgctgccttgaaattagtgacactgcattgagggggatgccaatacaaatatccaaat |
17312884 |
T |
|
| Q |
450 |
tagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattgatggtagccgaactaggaaaatttccccacctacatggaaaact |
549 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| | ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
17312885 |
tagaaaatctccacactttgtctaactttgtcgtcagtaaacgtaatgatggattgaactttgccgagctaggaaaatttacccacctacatggaaaact |
17312984 |
T |
|
| Q |
550 |
ttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatgaaagaacgaatagacaagttagctttagaatgggag |
649 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17312985 |
ttccatctcacaactacaaaatgttactgacccctctgaagcttttcaagccaatttgaagatgaaagaacggatagacaagttagctttagaatgggat |
17313084 |
T |
|
| Q |
650 |
tgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaaatttgaaaagcctcaccatcaaaggctatggtg |
749 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17313085 |
tgtggtagtactttttcagattcacaagttcaaagggttgtacttgaaaatttgagaccctcaacaaatttgaaaagtctcatcatcaaaggctatggtg |
17313184 |
T |
|
| Q |
750 |
gatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtatttaagggatctcgaattttgacaagtgtatatggctttccacccct |
849 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
17313185 |
gattcagcattccaaattggttgggtga-ttttttatttggcaacatggtgtatttaa-ggatctcgaattgtgataagtgtatatggc-ttccatccct |
17313281 |
T |
|
| Q |
850 |
tggacaattgggaaatttgaaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatgggttcctcctttc |
949 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||| |
|
|
| T |
17313282 |
tggaaaattgggtaatttg-aaagaactcattattgattcgatgctttcaataaagagtgttggtacagagttctacggaagtgat--aaccctcc-ttc |
17313377 |
T |
|
| Q |
950 |
atttcaaccatttccctccctggaggactctacacttggagggatatggcagaatgggag |
1009 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| || ||||||| ||||||||||| |
|
|
| T |
17313378 |
ttttcaaccatttccctccttgga-gactctacactttga-ggatatgccagaatgggag |
17313435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 150 - 322
Target Start/End: Original strand, 13934228 - 13934400
Alignment:
| Q |
150 |
atgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacct |
249 |
Q |
| |
|
||||| |||| ||| ||||||||||||| | |||||||||| | ||||| ||||||| ||||||| || | ||||| |||||||||||||| ||||||| |
|
|
| T |
13934228 |
atgacttgctgccacaaatgaaacagttacatgtgttgtctctatcaaattacaagaatatcactaagttgcccaactctattggaaatttaatatacct |
13934327 |
T |
|
| Q |
250 |
gcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacag |
322 |
Q |
| |
|
||| ||||||||||| |||| |||| ||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13934328 |
gcgatacttaaatctctctcgcactgggattagaaggttgccttctgaaacatgcaagctttacaatctacag |
13934400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 49 - 1009
Target Start/End: Original strand, 18388766 - 18389717
Alignment:
| Q |
49 |
taaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgttacaagaacaatcgcctctttgtttactatcaaacaagaccgta |
148 |
Q |
| |
|
||||||||||| |||||| || ||||||| ||||||||||||||||| |||| |||| ||||| |||| ||||||| |||| |||||| |||| |
|
|
| T |
18388766 |
taaatttgataaattgtatggagtaaaaggcatacgtacctttctagcattaccaatacagaaacaactgcctttttgtttgttatcgaacaaggtcgta |
18388865 |
T |
|
| Q |
149 |
catgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacc |
248 |
Q |
| |
|
|||| | |||| ||| |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
|
|
| T |
18388866 |
catggcttgctgccaacaatgaaacagttacgcatgctgtctttgtcaaactacaagagtatcactgaggttcccaaaacaattggaaatttgttacacc |
18388965 |
T |
|
| Q |
249 |
tgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttacaatctacagttcttgttattggcaggctgtagaaa |
348 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||| | ||| ||||||||| || |
|
|
| T |
18388966 |
tgcgctacttgaatctttctcatactaagattgaaaggttgccttctgaaacatgcaagctttacaatctgcagttcttgctgttgtcaggctgtaaaag |
18389065 |
T |
|
| Q |
349 |
gctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacattagtgacactgcattgggggagatgcccgcacaaatagccaaa |
448 |
Q |
| |
|
| || ||||||||| ||||||| ||| ||||||||||||||| |||||| |||||||||||||| || | |||||||||| ||||||||||||| |
|
|
| T |
18389066 |
gttcactgaattgccacaggacattggaaaattggtcaatctacgtcaccttgacgttagtgacactgcactgagtgagatgcccgtacaaatagccaaa |
18389165 |
T |
|
| Q |
449 |
ttagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattgatggtagccgaactaggaaaatttccccacctacatggaaaac |
548 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||| |||| |||||||||||||| ||| || || |||||||||||||| || ||||||||||||| |
|
|
| T |
18389166 |
ctagaaaatctccacactttgtctgacttcgttatcagcaaacataatggtggattgaaggttgcagagctaggaaaatttcctcatctacatggaaaac |
18389265 |
T |
|
| Q |
549 |
tttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatgaaagaacgaatagacaagttagctttagaatggga |
648 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
18389266 |
tttacatctcgcaactacaaaatgttaatgacccctctgaagcttttcaagccaatttgaatacgaaagaacgaatacacgagttagctttagaatggga |
18389365 |
T |
|
| Q |
649 |
gtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcgaccctcaacaaatttgaaaagcctcaccatcaaaggctatggt |
748 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || ||||||||| || |||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18389366 |
ttgtggtagtacttttttagattcacaagctcatagtgctgtacttaaacatttgcaaccttcaacaaatttgaaaagtctcaccatcaaaggctatggt |
18389465 |
T |
|
| Q |
749 |
ggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtatttaagggatctcgaattttgacaagtgtatatggctttccacccc |
848 |
Q |
| |
|
||| |||| |||||||||||||||||| |||||| |||||| ||||||||| | ||||| |||| || ||| ||| |||||| ||||| ||| |
|
|
| T |
18389466 |
ggaaccagctttccaaattggttgggtga-taatgtatttggaaacatgttgtatttaa-gaatctcaaattgtgtcaattgtctatggc-ttccatccc |
18389562 |
T |
|
| Q |
849 |
ttggacaattgggaaatttgaaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatgggttcctccttt |
948 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| || |||| |||||| || ||| || |
|
|
| T |
18389563 |
ttggacaattgggtaatttg-aaagaactcgttattgattcgttgctttccataaagagtgttggtacagagttttatggaaatgatgg--tcatcc-tt |
18389658 |
T |
|
| Q |
949 |
catttcaaccatttccctccctggaggactctacacttggagggatatggcagaatgggag |
1009 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| || ||||||| |||| |||||| |
|
|
| T |
18389659 |
catttcaaccatttccctcattgga-gactctacactttga-ggatatgccagagtgggag |
18389717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 886
Target Start/End: Original strand, 5989236 - 5990104
Alignment:
| Q |
14 |
ttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgttacaagaac |
113 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||| | |||||||| ||| |||| | |||| |||||||| ||||||||||||||||| || |||||| ||| |
|
|
| T |
5989236 |
ttgtcatacaatagagggctatatgactcatttaataaatttcataaattgtttggattcaaaggtttgcgtacctttctagcactgccattacaaaaac |
5989335 |
T |
|
| Q |
114 |
aatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcac |
213 |
Q |
| |
|
||| |||||||||||| |||||||||||| ||| | || |||| ||| |||||||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5989336 |
aattgcctctttgtttgctatcaaacaaggtagtaaacaacttgcttccaaaaatgaaatggttatgtgtgttatctttgtcaaactacaagagtatcac |
5989435 |
T |
|
| Q |
214 |
tgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaagctttac |
313 |
Q |
| |
|
| |||||||||| ||||||||||||||| ||||| ||| |||||| |||||||||||||| ||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
5989436 |
taaggttcccaagtctattggaaatttggtatacttgcagtactttaatctttctcacacaaatattgaaaggttgccttctgaaacatgcaatctttac |
5989535 |
T |
|
| Q |
314 |
aatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacattagtgaca |
413 |
Q |
| |
|
||||| || |||||||| ||| ||||||| || |||| |||| || || |||||||| ||| ||||||||||| | | |||||| ||| ||||| |
|
|
| T |
5989536 |
aatcttcaattcttgttgttgttgggctgtaaaaggctcattgagttaccggaggacatgggaaaattggtcaatttgcgccaccttgacgttaatgaca |
5989635 |
T |
|
| Q |
414 |
ctgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattgatggtagc |
513 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| || ||||||| ||| | | || |
|
|
| T |
5989636 |
ctgcattgacggagatgcccgtacaaattgccaaacttgaaaatctccacactttgtccaactttgttgtcagcaaacatattggtggactgaagattgc |
5989735 |
T |
|
| Q |
514 |
cgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatg |
613 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||| |||||| |||||||| ||| |||||||| |
|
|
| T |
5989736 |
agaactaggaaagtttccccatctacatggaaaactttccatctcacagatgcaaaatgttaatgacccctttgaagcttttcaagcaaatatgaagatg |
5989835 |
T |
|
| Q |
614 |
aaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcgaccctcaa |
713 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||| | ||| ||||||||| |||| |||||||| ||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
5989836 |
aaagaacaactagacgagttagctttagaatggaattgttgtagtacttcttcaaattcacaaattcaaagtgttgtacttgaacatttgcgaccctcaa |
5989935 |
T |
|
| Q |
714 |
caaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtatttaagggatc |
813 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |||| | |||||||||| ||||| |||| | || ||||||||||||| ||||| |
|
|
| T |
5989936 |
caaatttgaaaaatctcaccatcaaagggtatggtggaatcagcttttcaaattggttaggtga-ttctttatttagaaatatggtgtatttaa-ggatc |
5990033 |
T |
|
| Q |
814 |
tcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattga |
886 |
Q |
| |
|
|| | || ||| | ||| |||||| |||| ||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
5990034 |
tcaagttgtgatcattgtttatggc-ttcccccccttggacaattgggtaatctgaaaa-aactcattattga |
5990104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 886
Target Start/End: Complemental strand, 4236 - 3361
Alignment:
| Q |
7 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
106 |
Q |
| |
|
|||||| || ||||||| |||||| |||||||| || || ||||||||||| |||||| ||||||||| | ||||||||||||||||| |||| ||| |
|
|
| T |
4236 |
acataacttatcatacaatagaggtatatatgactcgtatagtaaatttgataaattgtatggattaaaagatctacgtacctttctagcattaccatta |
4137 |
T |
|
| Q |
107 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
206 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| |||||||| |||| ||| ||||||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
4136 |
caagaacatttgcctctttgtttgctatcaaacaagttagtacatgaattgctgccaacaatgaaacaattacgcgtgttgtctttgtcaaattacaaga |
4037 |
T |
|
| Q |
207 |
gtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
306 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |||| | ||||||||||||||| ||||||| |||||||| ||||||| |||||| ||| | |
|
|
| T |
4036 |
gtatcactgaggttcccaactctattgcaaatttgttacaccttcagtacttaaatctttcccacactatgattgaaaggttgccttctgaaacttgcga |
3937 |
T |
|
| Q |
307 |
gctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacatt |
406 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| ||| ||||||| |||||| |||||| || |
|
|
| T |
3936 |
gctttacaatctgcagttcttgttattgtcaggctgtaaaaagctcactgaattgccagaggacattggaaaattggttaatctatgccaccttgacgtt |
3837 |
T |
|
| Q |
407 |
agtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattga |
506 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| | |||||| |||| |
|
|
| T |
3836 |
agtgacactgcattgacagagatgcccatacaaatagccaaactagaaaatctccacactctgtatgactttgttgtcagcaaacaaactggtgggttga |
3737 |
T |
|
| Q |
507 |
tggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaattt |
606 |
Q |
| |
|
||| || || || |||| |||||||||| |||||||||||| || ||||| ||||||||||| | |||||||| |||||| ||||||||||| | |
|
|
| T |
3736 |
aggttcgagacctgggcaaatatccccacctatatggaaaactttgcatatcacagctacaaaatgtcagtgacccctttgaagcagttcaagccaatat |
3637 |
T |
|
| Q |
607 |
gaagatgaaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcga |
706 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| ||||||| | |||||||||| |||||| | |
|
|
| T |
3636 |
gaagatgaaagaacagatagacaagttatctttagaatgggattgtggtagtgctttttcaaattcacatattcaaagtgttgtacttgaacatttgcaa |
3537 |
T |
|
| Q |
707 |
ccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtattta |
806 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| ||| ||| |||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
3536 |
ccctcaacaaatttgaaaagtcttaccatcaaaggctatggtggaattagctttccgaattggtttggtga-ttccttatttagcaacatggtgtattta |
3438 |
T |
|
| Q |
807 |
agggatctcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattga |
886 |
Q |
| |
|
| ||||||| |||| | | ||| |||||| ||||||| ||||| |||||||| ||| |||||| ||||||||||||| |
|
|
| T |
3437 |
a-ggatctcaaattgtagtgattgtttatggc-ttccacctcttgggcaattgggtaatctgaaaa-aactcattattga |
3361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 309; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 7 - 1023
Target Start/End: Original strand, 16447494 - 16448490
Alignment:
| Q |
7 |
acataatttgtcatacactagagggatatatgattcacatgataaatttgatatgttgtatagattaaaaggtttacgtacctttctagcactaccgtta |
106 |
Q |
| |
|
||||||||| || |||||||||||| ||||| ||| |||||||||||| ||| || |||||||||| ||||||||||||||||| |||| || |
|
|
| T |
16447494 |
acataatttctcttacactagaggggattatgactcattaaataaatttgataaattgcatgaattaaaaggtctacgtacctttctagcattaccattt |
16447593 |
T |
|
| Q |
107 |
caagaacaatcgcctctttgtttactatcaaacaagaccgtacatgacctgctaccagaaatgaaacagttgcgtgtgttgtctttgtcaaactacaaga |
206 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||| | |||||| |||| ||| ||||| |||| || ||||| |||||||||||||||| | |
|
|
| T |
16447594 |
caagaacaatctcctctttgtctactatcgaacaaggtcatacatgcaatgctgccaaggatgaagaagttacgggtgttatctttgtcaaactacagaa |
16447693 |
T |
|
| Q |
207 |
gtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatctttctcacactaatattgaaagattgccttatgaaacatgcaa |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||| | |||||||| ||||||| | |||||||||| |
|
|
| T |
16447694 |
gtatcactgaggttcccaactctattggaagtttgatatacctgcggtacctaaatctttctcacacacagattgaaaggttgccttctaaaacatgcaa |
16447793 |
T |
|
| Q |
307 |
gctttacaatctacagttcttgttattggcaggctgtagaaagctcgttgaattgcccgaggacataggagaattggtcaatctacagtgtcttgacatt |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| || |||| ||||||||| || ||||| ||| |||| || ||||||| ||| ||||| |
|
|
| T |
16447794 |
gctttacaatctacagttcttgttgttgtcaggctgtaaaaggctcactgaattgccggaagacatgggaaaattagttaatctactccaccttaacatt |
16447893 |
T |
|
| Q |
407 |
agtgacactgcattgggggagatgcccgcacaaatagccaaattagaaaatctccacactttgtccaactttgttgtcagtaaacgtaatggtggattga |
506 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||| || |||||||||| | |||||| ||||||||||||| | ||||||||| |
|
|
| T |
16447894 |
agtgacactgcattgagggagatgcccgaacaaatagccaaactacaaaatctccaaagtttgtctgactttgttgtcagca---------gtggattga |
16447984 |
T |
|
| Q |
507 |
tggtagccgaactaggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaattt |
606 |
Q |
| |
|
| | || || ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| | ||||| | || ||| ||| | |
|
|
| T |
16447985 |
agattgcagagctaggaaaatttccccaactacatggaaaacttgcaatctcacagctacaaaatgttaatgacccattggaagcttctctagctaatat |
16448084 |
T |
|
| Q |
607 |
gaagatgaaagaacgaatagacaagttagctttagaatgggagtgtggtagtactttttcagattcacaagttcaaagggctgtacttgaaaatttgcga |
706 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||| || | ||||| | ||||||||||||||||||| |
|
|
| T |
16448085 |
gatgatgaaagaaagaatagacgagttagctttagaatgggattgtggtagtaatttttcagattcaaaaatacaaagtgttgtacttgaaaatttgcga |
16448184 |
T |
|
| Q |
707 |
ccctcaacaaatttgaaaagcctcaccatcaaaggctatggtggatacagcactccaaattggttgggtgannnnnnnatttggcaacatggtgtattta |
806 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||| ||| |||| |
|
|
| T |
16448185 |
ccctcgacaaatttgaaaagtctcaccatcaaaggctatggtggaatcagctttccaaattggttgggtga-tattttatttagcaacatgatgtcttta |
16448283 |
T |
|
| Q |
807 |
agggatctcgaattttgacaagtgtatatggctttccaccccttggacaattgggaaatttgaaaagaactcattattgattcgatgctttcaataaaga |
906 |
Q |
| |
|
| |||||||||||| ||| ||| |||||| |||| ||||||||||| ||||| ||| | |||||| ||||||||| | ||||| |||||| ||| |
|
|
| T |
16448284 |
a-ggatctcgaattgtgatgcttgtttatggc-ttcctccccttggacagttgggtaatct-aaaagagctcattattaaagggatgcaatcaatacaga |
16448380 |
T |
|
| Q |
907 |
gtgttagcacagagttctacggaagtgatgggttcctcctttcatttcaaccatttccctccctggaggactctacacttggagggatatggcagaatgg |
1006 |
Q |
| |
|
|| | || |||||||| ||||||||| ||| ||||||||||||||| |||||| ||| |||||||||||| || |||||||| ||| ||| |
|
|
| T |
16448381 |
caattggtactgagttctatggaagtgatcggt------cttcatttcaaccattcccctccttgg-tgactctacactttga-ggatatggaagagtgg |
16448472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 19560 - 19666
Alignment:
| Q |
167 |
atgaaacagttgcgtgtgttgtctttgtcaaactacaagagtatcactgaggttcccaaatctattggaaatttgttatacctgcggtacttaaatcttt |
266 |
Q |
| |
|
|||||||| || || ||| |||| ||||||||||||| ||||||||| ||| | ||||| ||||||||||||||| ||| ||||| ||||||||||| | |
|
|
| T |
19560 |
atgaaacaattacgcgtgctgtcgttgtcaaactacaggagtatcaccgagttgcccaattctattggaaatttgatatgtctgcgatacttaaatctct |
19659 |
T |
|
| Q |
267 |
ctcacac |
273 |
Q |
| |
|
|| |||| |
|
|
| T |
19660 |
ctaacac |
19666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 521 - 630
Target Start/End: Original strand, 19914 - 20023
Alignment:
| Q |
521 |
ggaaaatttccccacctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaagatgaaagaac |
620 |
Q |
| |
|
||||||||||| || ||| | ||||| ||||| |||||| | ||||||||| | | |||||||| ||| || ||| |||| ||||||||||||||||||| |
|
|
| T |
19914 |
ggaaaatttccgcatctaaagggaaatctttccatctcaaatctacaaaatatcactgacccctttgatgcttttgaagcaaatttgaagatgaaagaac |
20013 |
T |
|
| Q |
621 |
gaatagacaa |
630 |
Q |
| |
|
||| ||||| |
|
|
| T |
20014 |
aaattgacaa |
20023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 1013 - 1086
Alignment:
| Q |
536 |
ctacatggaaaactttcaatctcacaactacaaaatgttaatgacccctctgaagcctttcaagccaatttgaa |
609 |
Q |
| |
|
||||| || |||||||| | ||| ||||||||||||||| ||| |||| |||||| |||| |||||||||||| |
|
|
| T |
1013 |
ctacaaggtaaactttccctttcaaaactacaaaatgttactgatccctttgaagcttttctagccaatttgaa |
1086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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