View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348-Insertion-4 (Length: 288)
Name: NF5348-Insertion-4
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348-Insertion-4 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 38578423 - 38578593
Alignment:
| Q |
7 |
accaacaacagtggttacggttccctccactgtttcaacagcggatctcaaaggtcccgagttcttcttagcggattcatacagatatgagacaaacaca |
106 |
Q |
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| T |
38578423 |
accaacaacagtggttacggttccctccactgtttcaacagcggatctcaaaggtcccgagttcttcttagcggattcatacagatatgagacaaacaca |
38578522 |
T |
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| Q |
107 |
taagtatgaatagcagcgatcttcacaaacccaaggcgctttagttctttgttcttgttctcaaccttcag |
177 |
Q |
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| T |
38578523 |
taagtatgaatagcagcgatcttcacaaacccaaggcgctttagttctttgttcttgttctcaaccttcag |
38578593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 38591370 - 38591540
Alignment:
| Q |
7 |
accaacaacagtggttacggttccctccactgtttcaacagcggatctcaaaggtcccgagttcttcttagcggattcatacagatatgagacaaacaca |
106 |
Q |
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| T |
38591370 |
accaacaacagtggttacggctccctccactgtttcaacaacggatctcaaaggtcccgcgttcttcttagcggattcatacagatatgagataaacaca |
38591469 |
T |
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| Q |
107 |
taagtatgaatagcagcgatcttcacaaacccaaggcgctttagttctttgttcttgttctcaaccttcag |
177 |
Q |
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| T |
38591470 |
taagtatgaatagcagcgatcttcaaaaaccctaggtgctttagttctttgttcgtgtattcaaccttcag |
38591540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 38578665 - 38578704
Alignment:
| Q |
249 |
tataactatgctaacaacctcgttggtggccattgattag |
288 |
Q |
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| T |
38578665 |
tataactatgctaacaacctcgttggtggccattgattag |
38578704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 12532969 - 12533021
Alignment:
| Q |
71 |
ttcttagcggattcatacagatatgagacaaacacataagtatgaatagcagc |
123 |
Q |
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| T |
12532969 |
ttcttagctgattcatataaatatgagacaaacacataagtttgaatagcagc |
12533021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 38591612 - 38591651
Alignment:
| Q |
249 |
tataactatgctaacaacctcgttggtggccattgattag |
288 |
Q |
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| T |
38591612 |
tataactatgctaacaacctcaatggtggccattgattag |
38591651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 30496 - 30444
Alignment:
| Q |
71 |
ttcttagcggattcatacagatatgagacaaacacataagtatgaatagcagc |
123 |
Q |
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| T |
30496 |
ttcttagctgattcatataaatatgagacaaacacataagtttgaatagcagc |
30444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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