View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5348_high_10 (Length: 344)

Name: NF5348_high_10
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5348_high_10
NF5348_high_10
[»] chr8 (2 HSPs)
chr8 (1-328)||(15349057-15349384)
chr8 (126-216)||(4962191-4962281)
[»] chr4 (25 HSPs)
chr4 (1-319)||(48898911-48899232)
chr4 (121-319)||(45365789-45365987)
chr4 (124-318)||(48870857-48871051)
chr4 (124-318)||(48876161-48876355)
chr4 (124-318)||(48886543-48886737)
chr4 (188-319)||(48864396-48864527)
chr4 (128-259)||(7790381-7790512)
chr4 (126-232)||(7773481-7773587)
chr4 (188-319)||(45371643-45371774)
chr4 (176-259)||(48156058-48156141)
chr4 (188-319)||(45384459-45384592)
chr4 (176-249)||(7765991-7766064)
chr4 (128-249)||(7771696-7771817)
chr4 (178-259)||(49043797-49043878)
chr4 (177-249)||(7878733-7878805)
chr4 (188-248)||(49038518-49038578)
chr4 (188-243)||(48147358-48147413)
chr4 (179-249)||(48853033-48853103)
chr4 (131-216)||(7237415-7237500)
chr4 (176-249)||(7786813-7786886)
chr4 (188-249)||(7908663-7908724)
chr4 (186-219)||(48903314-48903347)
chr4 (178-261)||(50666666-50666749)
chr4 (188-249)||(7813838-7813899)
chr4 (179-219)||(48861640-48861680)
[»] chr3 (3 HSPs)
chr3 (122-319)||(47451469-47451666)
chr3 (188-245)||(11024146-11024203)
chr3 (188-233)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (122-232)||(9120058-9120168)
chr5 (188-249)||(42561972-42562033)
chr5 (168-219)||(179399-179450)
chr5 (188-249)||(29688490-29688551)
chr5 (188-246)||(29712083-29712141)
[»] chr1 (2 HSPs)
chr1 (188-232)||(24310577-24310621)
chr1 (181-248)||(24416132-24416199)
[»] chr7 (1 HSPs)
chr7 (179-249)||(48884176-48884246)
[»] chr6 (1 HSPs)
chr6 (191-219)||(21979297-21979325)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 15349057 - 15349384
Alignment:
Q  1 cattggttggcttttcatcgtgattttccttggcgtgataactttattgttgcatttgatttaaacgaaaggaagctgtttgagatgcctcatccagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15349057 cattggttggcttttcatcgtgattttccttggcgtgataactttattgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatg 15349156  T
Q  101 attttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15349157 attttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggt 15349256  T
Q  201 gatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  15349257 gatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgatgatccaactctgtacttttaccctttgtgccgtacaaag 15349356  T
Q  301 agtggtgatattattggaataaatgttg 328  Q
    ||||||||||||||||||||||||||||    
T  15349357 agtggtgatattattggaataaatgttg 15349384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  126 tggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaa 216  Q
    |||||||||||| ||||| |||||| | ||||| |||   | ||||||||  |||  |||| |||||||||||||||||||||||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 48898911 - 48899232
Alignment:
Q  1 cattggttggcttttcatcgtgattt---tccttggcgtgataactttattgttgcatttgatttaaacgaaaggaagctgtttgagatgcctcatccag 97  Q
    ||||||||||||||||||||||||||   ||| |||  ||||||  | |||||||| ||||||||||  |||||||| ||||| |||||| ||| |||||    
T  48898911 cattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccag 48899010  T
Q  98 atgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatg 197  Q
    ||||||| ||||||  | ||   ||||||||||||||||||||||| || ||||| ||| | ||| || |  ||||| ||||||||| | ||||||||||    
T  48899011 atgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatg 48899110  T
Q  198 ggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtaca 297  Q
    ||||||||||||||| ||||| || || |||||||||  || ||||||||||  ||||||||  | ||| ||| ||||||||||||| |||||| |||||    
T  48899111 ggtgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtaca 48899210  T
Q  298 aatagtggtgatattattggaa 319  Q
    || |||||  ||||||||||||    
T  48899211 aaaagtggctatattattggaa 48899232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 45365987 - 45365789
Alignment:
Q  121 gattgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtga 220  Q
    ||||||||||||||||| ||||| |||||||| ||| ||||| ||| |||||||  |||||||| | ||||||||||||||||||||||||| ||||||     
T  45365987 gattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgc 45365888  T
Q  221 actcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaa 319  Q
      || ||||||||||||| ||  ||||||  ||||||||  | ||| ||||  ||||||| |||||| |||  |||||| || ||||||||||||||||    
T  45365887 gttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtgatattattggaa 45365789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 48870857 - 48871051
Alignment:
Q  124 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 223  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48870857 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48870956  T
Q  224 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattgga 318  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||    
T  48870957 cgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattgga 48871051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 48876161 - 48876355
Alignment:
Q  124 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 223  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48876161 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48876260  T
Q  224 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattgga 318  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||    
T  48876261 cgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattgga 48876355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 48886543 - 48886737
Alignment:
Q  124 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaact 223  Q
    |||||||||||||| ||||| |||||| | ||||| |   ||| |||||||  | || ||| | ||||||| ||||||||||| ||||||||||||||||    
T  48886543 tgtggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaact 48886642  T
Q  224 cttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattgga 318  Q
    | ||||||||||||| ||||||||||  | ||||||| | | |   |  || ||||| ||| |||||| ||||||| ||||||||||||||||||    
T  48886643 cgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccccattgtgctgtacaaaaagtggtgatattattgga 48886737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 48864396 - 48864527
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttacccttt 287  Q
    |||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||  |||||||  || | | |||| |||||||   |||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattttatttccactcggtactttcttccttt 48864495  T
Q  288 gtgccgtacaaatagtggtgatattattggaa 319  Q
     |||  |||||| ||||| |||||||||||||    
T  48864496 atgctctacaaaaagtggcgatattattggaa 48864527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 7790381 - 7790512
Alignment:
Q  128 gtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttc 227  Q
    |||||||||| ||||| |||||| | ||| | ||  ||| |||||||  |||||||| | |||||||||||||||||||||||||||||||| | || ||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  228 ttggacaaagattcttgttcttaatattgatg 259  Q
    |||||| || | ||||||||||  ||||||||    
T  7790481 ttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  126 tggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactct 225  Q
    |||||||||||| ||||| |||| | ||||| | ||| ||| |||| || ||||||||| | |||||||||||||||||||||||||||||||| | ||     
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  226 tcttgga 232  Q
    |||||||    
T  7773487 tcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 45371774 - 45371643
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttacccttt 287  Q
    ||||||||||||| |||||||||||||||||| | || |||||||| |||| | ||||||||  ||| ||||    |||||||| |||||||| ||| ||    
T  45371774 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtacttttccccatt 45371675  T
Q  288 gtgccgtacaaatagtggtgatattattggaa 319  Q
    |||  ||||||| || |||||||| |||||||    
T  45371674 gtgttgtacaaaaagcggtgatataattggaa 45371643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 48156141 - 48156058
Alignment:
Q  176 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg 259  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||| | ||||||||||| || | |||||| |||  ||||||||    
T  48156141 ctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgatg 48156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 45384592 - 45384459
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg--ataatccaactctgtacttttaccct 285  Q
    ||||||||||||||||||||||||| |||||| | || ||||||||||||| || |||||||  | ||||||  ||| |||  |||| | | ||| ||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgatggtatattccttctctatccctttcccct 45384493  T
Q  286 ttgtgccgtacaaatagtggtgatattattggaa 319  Q
    || |||  |||||| || ||||||||||||||||    
T  45384492 ttatgctctacaaaaagcggtgatattattggaa 45384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 7765991 - 7766064
Alignment:
Q  176 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    ||||||||| | |||||||||||||||||||||||||||||||| | || || ||||| ||||  |||||||||    
T  7765991 ctaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 7771696 - 7771817
Alignment:
Q  128 gtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttc 227  Q
    |||||||||| ||||| |||||| | ||| | ||  ||| |||||||  |||||||| | ||| |||||||||||||||||||||||||||| | || ||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  228 ttggacaaagattcttgttctt 249  Q
     ||||| || | ||||||||||    
T  7771796 atggactaaaactcttgttctt 7771817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 49043878 - 49043797
Alignment:
Q  178 aatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatg 259  Q
    ||||||| | |||||||||||||||||||||||||||||||| | || || ||||| |||| ||||||| ||  ||||||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatg 49043797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 7878733 - 7878805
Alignment:
Q  177 taatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||||| | |||||||||||||||||||||||||||||||| | || |||||||  || | ||||||||||    
T  7878733 taatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 49038578 - 49038518
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 248  Q
    |||||||||||||||||||||||||||||||  | || |||||||| |||| |||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 48147413 - 48147358
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattctt 243  Q
    |||||||||||||||||||||||||||||||| | || |||||||| |||| ||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 48853033 - 48853103
Alignment:
Q  179 atgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||| | ||||||||||||| ||||||||||||||||||   || |||||||| |||| ||||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 7237500 - 7237415
Alignment:
Q  131 tgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaa 216  Q
    ||||||| ||||| |||||| | ||||| ||| ||  |||||||  |||||||| | ||| |||||||||||||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaa 7237415  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 7786813 - 7786886
Alignment:
Q  176 ctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    ||||||||| | |||||||||||||||||||||||||||| ||| | |  |||||||  |||| ||||||||||    
T  7786813 ctaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 7908663 - 7908724
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||||||||||||||||||||||||||||| | || |||||||  || | ||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctt 7908724  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 48903314 - 48903347
Alignment:
Q  186 atttgaaatatgggtgatgaaagaatacaaagtg 219  Q
    ||||||||||||||||||||||||||||||||||    
T  48903314 atttgaaatatgggtgatgaaagaatacaaagtg 48903347  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 50666666 - 50666749
Alignment:
Q  178 aatgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgat 261  Q
    ||||||| | ||||| ||||||||||| |||||||||||||| | || |||||||| || | ||||||| || | |||||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgttattcacattgatgat 50666749  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 7813838 - 7813899
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||||||||||| ||||||||||||||||| | || |||||||  || | ||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctt 7813899  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 48861640 - 48861680
Alignment:
Q  179 atgatagatttgaaatatgggtgatgaaagaatacaaagtg 219  Q
    |||||| ||||||||||||||| || |||||||||||||||    
T  48861640 atgatacatttgaaatatgggtaataaaagaatacaaagtg 48861680  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 319
Target Start/End: Complemental strand, 47451666 - 47451469
Alignment:
Q  122 attgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaa 221  Q
    |||||||||||||||| ||||| |||||| |||||||  ||  |  ||||| || |||||||| | ||||||||||||||||||||||||||||||| ||    
T  47451666 attgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaa 47451567  T
Q  222 ctcttcttggacaaagattcttgttcttaatattgatgataatccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaa 319  Q
     || ||||||  ||||| ||||||||||  ||||||||  | |||  ||| |||||||||||| ||   |  |||||| |||||||||||||||||||    
T  47451566 ttcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtacttttaccccttaacctctacaaaaagtggtgatattattggaa 47451469  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgt 245  Q
    ||||||||||||| |||||||||||||||||| | || |||||||| |||| ||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 11005628 - 11005583
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggac 233  Q
    ||||||||||||| |||||||||||||||||| | || ||||||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggac 11005583  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 9120058 - 9120168
Alignment:
Q  122 attgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtgaa 221  Q
    |||||| | ||||||| ||||| |||||| | ||| | ||| ||| ||||| | ||||||||| | |||||||||||||||||||||||||||||||| |    
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  222 ctcttcttgga 232  Q
     || |||||||    
T  9120158 ttcctcttgga 9120168  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 42562033 - 42561972
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||| ||||||||||||||||||||||||||| | || |||||||| |||||||||||||||    
T  42562033 ttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttctt 42561972  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 179399 - 179450
Alignment:
Q  168 ggattatcctaatgatagatttgaaatatgggtgatgaaagaatacaaagtg 219  Q
    |||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  179399 ggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 29688490 - 29688551
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||||||||||||||||| ||||||| ||| | || ||||||||||||| ||| ||||||    
T  29688490 ttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctt 29688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 29712141 - 29712083
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgtt 246  Q
    ||||||||||||||||| || ||||||| ||||  ||||||||||| |||| |||||||    
T  29712141 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 24310577 - 24310621
Alignment:
Q  188 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttgga 232  Q
    |||| ||||||||||||||||||||||||||| | ||||||||||    
T  24310577 ttgatatatgggtgatgaaagaatacaaagtgcagtcttcttgga 24310621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 24416132 - 24416199
Alignment:
Q  181 gatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 248  Q
    |||||| |||| ||||||||||||||||||||||||| | | || |||||||| || | |||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 48884176 - 48884246
Alignment:
Q  179 atgatagatttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 249  Q
    |||||| | ||||||||| |||||||||||||||||||||| |    |||||||| |||| ||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttctt 48884246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 21979325 - 21979297
Alignment:
Q  191 aaatatgggtgatgaaagaatacaaagtg 219  Q
    |||||||||||||||||||||||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtg 21979297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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