View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_high_7 (Length: 383)
Name: NF5348_high_7
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 45706753 - 45707122
Alignment:
| Q |
1 |
actgtaggattaaaatgagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacg |
100 |
Q |
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| T |
45706753 |
actgtaggattaaaatgagttatgtgtatagttttatgttgaagtgtatatacctcattttcccaatcacatcgtgctgttactatgataagtatcaacg |
45706852 |
T |
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| Q |
101 |
tttggattgctgtaccaccaaatatcattccaccccatataccctgtcaccatacatataaattaaataaatgatcattagaaaaattaattaagtttat |
200 |
Q |
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| T |
45706853 |
tttggattgctgtaccaccaaatatcattccaccccatataccctgtcaccatacatataaattaaataaatgatcattagaaaaattaattaagtttat |
45706952 |
T |
|
| Q |
201 |
ggtaattaattatatacttacttcaacaccagtattaaaaacccatcccatgagaattccaagtgggagtccaattagatagtaacatcctatatttaca |
300 |
Q |
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| T |
45706953 |
ggtaattaattatatacttacttcaacaccagtattaaaaacccatcccatgagaattccaagtgggagtccaattagatagtaacatcctatatttaca |
45707052 |
T |
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| Q |
301 |
tatgccacaaatacttgccaccctgaaccaacagctactccagagagaataggttgaacactattgagaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45707053 |
tatgccacaaatacttgccaccctgaaccaacagctactccagagagaataggttgaacactattgagaa |
45707122 |
T |
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