View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_1 (Length: 481)
Name: NF5348_low_1
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 29357814 - 29358265
Alignment:
| Q |
19 |
cattctcttcaatcttaggtactggattagccaccattgttgatgctaccatttg------agtttgagtttgaccttgaccttgaccattcctgctcaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29357814 |
cattctcttcaatcttaggtactggattagccaccattgttgatgctaccatttgagtttgagtttgagtttgaccttgaccttgaccattcctgctcaa |
29357913 |
T |
|
| Q |
113 |
catttcaaccctcctattgatatctttcaaatactgatcaatcaaccatgccatatcattcaaatcaaccatgcttatattgtgcataacttgatcagca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357914 |
catttcaaccctcctattgatatctttcaaatactgatcaatcaaccatgccatatcattcaaatcaaccatgcttatattgtgcataacttgatcagca |
29358013 |
T |
|
| Q |
213 |
ctaaggtactgaaacattaactgagtcatttctttttctctattatcctttctttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29358014 |
ctaaggtactgaaacattaactgagtcatttctttttctctattatcctttctttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaa |
29358113 |
T |
|
| Q |
313 |
aactctcttggttcaccatctttttgctttgttccaattcaggcatttttcggaactttgaaagcaccctttggactcctaaaggagatggccaaacctc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29358114 |
aactctcttggttcaccatctttttgctttgttccaattcaggcatttttcggaactttgatagcaccctttggactcctaaaggagatggccaaacctc |
29358213 |
T |
|
| Q |
413 |
aggttgaggatcgtatggactatagattatagcacaagcatcaataccacag |
464 |
Q |
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| T |
29358214 |
aggttgaggatcgtatggactatagattatagcacaagcatcaataccacag |
29358265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 175 - 388
Target Start/End: Original strand, 33046128 - 33046341
Alignment:
| Q |
175 |
aatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcctttctttgtttagt |
274 |
Q |
| |
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|||||||||| ||||| |||| ||||| || | | ||||||| || |||||||| | ||||||||||| |||||||||||||| || |||||||| || |
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| T |
33046128 |
aatcaaccatacttatgttgtccataagtttacctgcactaatatattgaaacatgagatgagtcatttccttttctctattatctttcctttgttttgt |
33046227 |
T |
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| Q |
275 |
caattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattcaggcatttttcggaactttgaa |
374 |
Q |
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|||||| |||||||||||||| || | || || | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
33046228 |
caattgctctttcgccttttggattctttgtcttagaaaactctcttgattcaccatctttttgctttgttccaattcaggcatttttcttaacttgtta |
33046327 |
T |
|
| Q |
375 |
agcaccctttggac |
388 |
Q |
| |
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|| ||||||||||| |
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| T |
33046328 |
aggaccctttggac |
33046341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 33046085 - 33046137
Alignment:
| Q |
109 |
tcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaaccat |
161 |
Q |
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|||||||||||||||| ||||| || |||||||| || ||||||||||||||| |
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| T |
33046085 |
tcaacatttcaacccttctattaatctctttcaagtattgatcaatcaaccat |
33046137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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