View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_11 (Length: 302)
Name: NF5348_low_11
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_11 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 38357380 - 38357096
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38357380 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
38357281 |
T |
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| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38357280 |
ctgggtcgtcagctaggcccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
38357181 |
T |
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| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
302 |
Q |
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| T |
38357180 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
38357096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 3584874 - 3585158
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
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|||||||||||||| || || |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||| |
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| T |
3584874 |
ccctttccggtcacgatggcttgaacaaagaatccaaacatagagaacatcgctaacctaccattcttgagttctttaacctttaactctgcaaaagcct |
3584973 |
T |
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| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
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| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||| || |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
3584974 |
cggggtcctcagcaaggcccaatgggtcaaagcttccacctggatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaac |
3585073 |
T |
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| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
302 |
Q |
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||| ||||| |||||||||||| |||||| || ||||| ||||| || |||||||| | |||||||||||||||||||||||| |
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| T |
3585074 |
agctcccattaagataacttggacagcccaaatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagt |
3585158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 3576344 - 3576060
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||| ||||| ||||| ||||| || ||||| |||||||| ||||||| |
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| T |
3576344 |
ccctttccggttacaatggcctgaacgaagaatccaaacatagagaacatagctagcctaccattcttaagttctttcacctttaactctgcaaaagcct |
3576245 |
T |
|
| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
| |
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||||||||||||| || ||||||||||||||||| || |||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
3576244 |
ctgggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaac |
3576145 |
T |
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| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
302 |
Q |
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||| ||||| |||||||||||| |||||| || ||||| || || || || ||||| | |||||||||||||||||||||||| |
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| T |
3576144 |
agctcccattaagataacttggacagcccatatagcaaggatactttgtgcgtggactaggcttgggttacccaagtagtcaagt |
3576060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 3564365 - 3564082
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
| |
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|||||||| |||||||| || ||||| || ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||| ||||||| |
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| T |
3564365 |
ccctttccagtcacaatggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcct |
3564266 |
T |
|
| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
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| || || || || || ||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
3564265 |
cgggatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaac |
3564166 |
T |
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| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaag |
301 |
Q |
| |
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||| ||||| |||||||||||| |||||| || ||||| ||||| || |||||||| | |||||||||||||||||||||||| |
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| T |
3564165 |
agcacccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaag |
3564082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 3573057 - 3572776
Alignment:
| Q |
21 |
tttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcctctg |
120 |
Q |
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|||||||| |||||||| |||||||||||||| ||||| || ||||| ||||| || || || |||||||| || ||||| |||||||| |||||||||| |
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| T |
3573057 |
tttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctttcacctttaactctgcaaaagcctctg |
3572958 |
T |
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| Q |
121 |
ggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagc |
220 |
Q |
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|||| |||||||| || ||||||||||| || || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||| |
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| T |
3572957 |
ggtcatcagctaggcctaatgggtcaaaactaccacctgggtagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacagc |
3572858 |
T |
|
| Q |
221 |
gcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
302 |
Q |
| |
|
||||| |||||||||||| |||||| || ||||| ||||| || |||||||| | |||||| || ||||||||||||||| |
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| T |
3572857 |
acccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactagacttggatttcccaagtagtcaagt |
3572776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 3570013 - 3569729
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
| |
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||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||| ||||||| |
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| T |
3570013 |
ccctttccggtgacaatggcctgaacgaagaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcct |
3569914 |
T |
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| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
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| || || || || || ||||| |||||||||||||| |||||||| ||||| || || ||||| || ||||| |||||||||||||||||||| || || |
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| T |
3569913 |
cgggatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccac |
3569814 |
T |
|
| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagt |
302 |
Q |
| |
|
|||||||| |||||||||||| ||||| || ||||| ||||| || |||||||| | ||||||||||||||||||||||||| |
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| T |
3569813 |
ggcgcccattaagataacttggactgcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagt |
3569729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 13276291 - 13276011
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||||| | || || || ||||||||| | ||||| | |
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| T |
13276291 |
ccctttccggtcacaatggcttgaacgaagaatccaaacatagaaaacatggctaacctaccattcttaatctctttcactttcaactctacaaaagctt |
13276192 |
T |
|
| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
| |
|
||||||| || || |||||||||||||| ||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
13276191 |
ctgggtcatcggcgagacccaatgggtcgaagctaccacctgggtagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaac |
13276092 |
T |
|
| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtc |
298 |
Q |
| |
|
||| |||||||||||||||||| ||||| |||||||| ||||| || ||||| || | ||||||||| ||||| ||||| |
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| T |
13276091 |
agcacccatcaagataacttggcaggcccatatggcaaggatgctttgtgcatgtacaagacttgggttgcccaaatagtc |
13276011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 3578200 - 3577917
Alignment:
| Q |
18 |
ccctttccggtcacaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcct |
117 |
Q |
| |
|
|||||| |||| ||||| |||||||| || ||||| ||||| |||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||||| |
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|
| T |
3578200 |
cccttttcggttacaatggcctgaacgaaaaatccaaacatcgagaacatagctaacctgccattcttgagttctttaacctttaactctgcaaaagcct |
3578101 |
T |
|
| Q |
118 |
ctgggtcgtcagctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaac |
217 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| || || ||||| ||||| || || |||||||||||||| ||| | |||||||||||||| ||||| |
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| T |
3578100 |
ctgggtcgtctgcgaggcccaatgggtcaaagcttccaccggggtagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaac |
3578001 |
T |
|
| Q |
218 |
agcgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaag |
301 |
Q |
| |
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||| ||||| |||||| || || | |||| || ||||| ||||| || || ||||| | ||||||||||||||||||||||| |
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| T |
3578000 |
agctcccattaagatagctaggacaacccaaatagcaaggatgctttgtgcgtggactaggcttgggttacccaagtagtcaag |
3577917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 42603165 - 42602894
Alignment:
| Q |
30 |
acaatagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcctctgggtcgtcag |
129 |
Q |
| |
|
||||| || ||||||||||| || ||||| |||||||| || |||| ||||||||||||||||| ||||||||||||||||| || || ||||| |||| |
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| T |
42603165 |
acaatggcttgaacaaagaaaccaaacatggagaacatagccaatcggccgttcttgagttccttgaccttcaactctgcgaatgcatcggggtcatcag |
42603066 |
T |
|
| Q |
130 |
ctagacccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagcgcccatcaa |
229 |
Q |
| |
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| ||||| | ||||||||| || || ||||| |||||||| | | |||||||| || || ||| ||| | ||| ||||||||| ||||| | |
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| T |
42603065 |
caagaccaagagggtcaaaggcaccaccagggtaaagtgggtccagtccttcaccaagtggtcctccaccaactctgtagccttcaacaaatcccatgag |
42602966 |
T |
|
| Q |
230 |
gataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaag |
301 |
Q |
| |
|
| ||| || ||||||||||| |||||||||||||||||||||| || ||||||| ||||| |||||||| |
|
|
| T |
42602965 |
cacaacctgagtagcccagattgcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaag |
42602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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