View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_12 (Length: 262)
Name: NF5348_low_12
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 34044013 - 34043763
Alignment:
| Q |
1 |
gaaggcagtcaccgatctcattgcccattgaagttcttggaggatgagaagctccattctcattaccatcggaggggttatcctcacattcatgtccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34044013 |
gaaggcagtcaccgatctcattgcccattgaagttcttggagaatgagaagctccattctcattaccatcggaggagttatcctcacattcatgtccctc |
34043914 |
T |
|
| Q |
101 |
tgtgcaaccagtgagttcatttagtgaatttaaaaacaatgctctataacatagtcattggaatacaaatttatttagttttaggaacccaaatgtttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34043913 |
tgtgcaaccagtgagttcatttagtgaatttaaaaacaatgctctataacatagtcattggaa-acaaatttatttagttttaggaacccaaatgtttct |
34043815 |
T |
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| Q |
201 |
tttccatcatctcttagggaaaaaccaatcacagcttcaataattagtataa |
252 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34043814 |
tttccatcgtctcttagggaaaaaccaaccacagcttcaataattagtataa |
34043763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4045517 - 4045739
Alignment:
| Q |
1 |
gaaggcagtcaccgatctcattgcccattgaagttcttggaggatgagaagctccattctcattaccatcggaggggttatcctcacattcatgtccctc |
100 |
Q |
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|||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
4045517 |
gaaggcagtcactgatctcattggcaattgaagttcttggagaatgagaagctccattctcattaccatcggcggagttatcctcacattcatgtccctc |
4045616 |
T |
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| Q |
101 |
tgtgcaaccagtgagttcatttagtgaatttaaaaacaatgctctataacatagtcattggaatacaaatttatttagttttaggaacccaaatgtttct |
200 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
4045617 |
tgtgcaaccagtaagttcatttagtgaatttaaaatcaatgctct-----------attggaatataaatttatttagttttaggaaccgaaatgtttct |
4045705 |
T |
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| Q |
201 |
tttccatcatctcttagggaaaaaccaatcacag |
234 |
Q |
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|||||||| |||||||| ||||||||| |||||| |
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| T |
4045706 |
tttccatcgtctcttagcgaaaaaccagtcacag |
4045739 |
T |
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