View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_13 (Length: 260)
Name: NF5348_low_13
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 34044138 - 34044376
Alignment:
| Q |
5 |
tacttcaagctcattataatttgctatttctatgttttgtccaacagtcttgctaggagaatatatactaatattcattggaatttttctcttcttattc |
104 |
Q |
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| T |
34044138 |
tacttcaagctcattataatttgctatttctatgttttgtccaacagtcttgcttggagaatatatactaatattcattggaatttttctcttcttattc |
34044237 |
T |
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| Q |
105 |
tgcagagcacacctttgctcactacatgccttctcatattgcaatctccgcttttctggctgctgccaaaaccaaatatccctcaaagtatagcgaaatt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34044238 |
tgcagagcacacctttgctcactacatgccttctcatattgcaatctccgcttttctggctgctgcccaaaccaaatatccctcaaagtatagcgaaatt |
34044337 |
T |
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| Q |
205 |
gcagaagacattaagagcaaaattggacttcaagtatgt |
243 |
Q |
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| T |
34044338 |
gcagaagacattaagagcaaaattggacttcaagtatgt |
34044376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 4045392 - 4045154
Alignment:
| Q |
5 |
tacttcaagctcattataatttgctatttctatgttttgtccaacagtcttgctaggagaatatatactaatattcattggaatttttctcttcttattc |
104 |
Q |
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|||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4045392 |
tacttcaagctcgttagaatttgctatttctatgtttagtccaacagtcatgctaggagaatatatactaatattcattggaatttttctcttcttattc |
4045293 |
T |
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| Q |
105 |
tgcagagcacacctttgctcactacatgccttctcatattgcaatctccgcttttctggctgctgccaaaaccaaatatccctcaaagtatagcgaaatt |
204 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||||||| |
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| T |
4045292 |
tgcagagcacgcctttgctcactgcatgccttctcatattgcaatctccgcttttctggcagctgtcaaaacccaatatccctcaaaatatagcgaaatt |
4045193 |
T |
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| Q |
205 |
gcagaagacattaagagcaaaattggacttcaagtatgt |
243 |
Q |
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||| ||||||||| |||||||||||| |||||||||||| |
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| T |
4045192 |
gcaaaagacattacgagcaaaattggccttcaagtatgt |
4045154 |
T |
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