View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_16 (Length: 250)
Name: NF5348_low_16
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_16 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 36705 - 36460
Alignment:
| Q |
1 |
tgttcttccatcaaaacttcagctttttgcgtcaaaccacaccataacaccccattacgatccttatagagctcaaaaagttttggggttttgcgaagaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36705 |
tgttcttccatcaaaacttcagctttttgtgtcaaaccacaccataacaccccattacgatccttatagagctcaaaaagttttggggttttgcgaagaa |
36606 |
T |
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| Q |
101 |
aatcagagattctgtgaggttttggaaggctgatttgtttacgataatgtgaaagggatcgaacgggaataacaatttctggttcttgttcgagaagttc |
200 |
Q |
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| T |
36605 |
aatcagagattctgtgaggttttggaaggctgatttgtttacgataatgtgaaagggatcgaacgggaataacaatttctggttcttgttcgagaagttc |
36506 |
T |
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| Q |
201 |
tattnnnnnnncgattttggatgttatcttccatttctctgctgct |
246 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
36505 |
tattaaaaaaacgattttggatgttatcttccatttctctgttgct |
36460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 48661934 - 48661689
Alignment:
| Q |
1 |
tgttcttccatcaaaacttcagctttttgcgtcaaaccacaccataacaccccattacgatccttatagagctcaaaaagttttggggttttgcgaagaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48661934 |
tgttcttccatcaaaacttcagctttttgagtcaaaccacaccataacaccccattacgatccttatagagctcaaaaagttttggggttttgcgaagaa |
48661835 |
T |
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| Q |
101 |
aatcagagattctgtgaggttttggaaggctgatttgtttacgataatgtgaaagggatcgaacgggaataacaatttctggttcttgttcgagaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48661834 |
aatcagagattctgtgaggttttggaaggctgatttgtttacgataatgtgaaagggatcgaacgggaataacaatttctggttcttgttcgagaagttc |
48661735 |
T |
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| Q |
201 |
tattnnnnnnncgattttggatgttatcttccatttctctgctgct |
246 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
48661734 |
tattaaaaaaacgattttggatgttatcttccatttctctgttgct |
48661689 |
T |
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