View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_2 (Length: 470)
Name: NF5348_low_2
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 210 - 398
Target Start/End: Original strand, 45080809 - 45080998
Alignment:
| Q |
210 |
attagctttgtaaccaaaagttatgggcacataataggcttctacgccnnnnnnn-atgaataaaatagggcagacatccaaactgaaaaggttagcttg |
308 |
Q |
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| T |
45080809 |
attagctttgtaaccaaaagttatgggcacataataggcttctacgccttttttttatgaataaaatagggcagacatccaaactgaaaaggttagcttg |
45080908 |
T |
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| Q |
309 |
ggaatgaagcttgcacgtaagcatgaataacagcataaaagacttggcaaagcatatgcaacttggcatgtttctctacagatatgattc |
398 |
Q |
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| T |
45080909 |
ggaatgaagcttgcacgtaagcatgaataacagcataaaagacttggcaaagcatatgcaacttggcatgtttctctaaagatatgattc |
45080998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 45080609 - 45080736
Alignment:
| Q |
10 |
attattctataccatattgagatttttacttaatatacaagtattaaatatcaaattgttttggctgataaatg-nnnnnnnntatgttttgttgaggaa |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45080609 |
attattctatactatattgagatttttacttaatatataagtattaaatatcaaattgttttggttgataaatgaaaaaaaattatgttttgttgaggaa |
45080708 |
T |
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| Q |
109 |
tataaattgttagtcatgggcatgtata |
136 |
Q |
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| T |
45080709 |
tataaattgttagtcatgggcatgtata |
45080736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 45080998 - 45081030
Alignment:
| Q |
417 |
catctagataaggctaaaatgtgaggtacaatg |
449 |
Q |
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| T |
45080998 |
catctagataaggctaaaatgtgaggtacaatg |
45081030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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