View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_3 (Length: 459)
Name: NF5348_low_3
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 34747540 - 34747114
Alignment:
| Q |
9 |
agcagagataggatgaagattaaactaaacaaacaaaagaaaatggagacttgacaaatagaactagcaatatgctcatttccaaagcaacaaaaaaata |
108 |
Q |
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| T |
34747540 |
agcagagataggatgaagattaaactaaacaaacaaaagaaaatggagacttgacaaatagaaatagcaatatgctcatttccaaaacaacaaaaaaata |
34747441 |
T |
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| Q |
109 |
gaaatattcatacaagtactacagaaagnnnnnnnnnn--tgcatacaagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctca |
206 |
Q |
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| T |
34747440 |
gaaatattcatacaagtactacagaaagaaaaaaaaaacatgcatacaagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctca |
34747341 |
T |
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| Q |
207 |
ctcatgcccttcatgagaaagaagactcactcaaacaaagtaatttgaaagataagtagattatagtataaaccatacataaccaacttggtcaagaaag |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34747340 |
ctcatgtccttcatgagaaagaagactcactcaaacaaagtaatttgaaagataagtagattatagtataaaccatacataaccaacttggtcaaaaaa- |
34747242 |
T |
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| Q |
307 |
tgtgtgtgtgcgtgagcgcgtgtatgagatttttgttggtgaacagatcgatgtatatccgtgcacaactgcggagactgaattctcaaggtcaagagga |
406 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34747241 |
---gtgtgtgcgtgcgcgcgtgtatgagatttttgttggtgaaca----gatgtatatccgtgcacaactgcggagactgaattctcaaggtcaagagga |
34747149 |
T |
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| Q |
407 |
ctgatgtgagacttaccggtgattagagcggttag |
441 |
Q |
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| T |
34747148 |
ccgatgtgagacttaccagtgattagagcggttag |
34747114 |
T |
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