View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_4 (Length: 458)
Name: NF5348_low_4
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_4 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 2 - 441
Target Start/End: Original strand, 48661938 - 48662377
Alignment:
| Q |
2 |
aagggtcattgaggaaaattaagataaagctgctgaatatgttactaggttgcttatgatgtctgttgataaacgtgttcagttggataaaattgcgcat |
101 |
Q |
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| T |
48661938 |
aagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggttgcttatgatgtctgttgataaacgtgttcagttggataaaattgcgcat |
48662037 |
T |
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| Q |
102 |
tttcgaagagattttgggttgccaatggattttagaactcattgggtgcataagtatcctcagctttttcgtgtggtgaaaccttctcttgatgatgttg |
201 |
Q |
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| T |
48662038 |
tttcgaagagattttgggttgccaatggattttagaactcattgggtgcataagtatcctcagctttttcgtgtggtgaagccttctcttgatgatgttg |
48662137 |
T |
|
| Q |
202 |
agtttttggagcttgtttcttggaattctgaatgggctatcacagagattgagaagaagaataagatgattgtggaaggggtaactgaaaccgaacatac |
301 |
Q |
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| T |
48662138 |
agtttttggagcttgtttcttggaattctgaatgggctatcacagagattgagaagaagaataagatgattttggaaggggtaaccgaaaccgaacatac |
48662237 |
T |
|
| Q |
302 |
tccgggtttgctttctctgccatttcctttaaaatttcctgcaaattttaaaagggtgcatagttattatggtgaaaagataaaaatgtttcaggagagg |
401 |
Q |
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| T |
48662238 |
tccgggtttgctttctctgccatttcctttgaaatttcctgcaaattttaaaagggtgcatagttattatggtgaaaagataaaaatgtttcaggagagg |
48662337 |
T |
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| Q |
402 |
acttatttgtctccttatgccgatgcgaagggtttaaaac |
441 |
Q |
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| T |
48662338 |
acttatttgtctccttatgccgatgcgaagggtttaaaac |
48662377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 2 - 441
Target Start/End: Original strand, 36709 - 37148
Alignment:
| Q |
2 |
aagggtcattgaggaaaattaagataaagctgctgaatatgttactaggttgcttatgatgtctgttgataaacgtgttcagttggataaaattgcgcat |
101 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709 |
aagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggttgcttatgatgtctgttgataaacgtgttcagttggataaaattgcgcat |
36808 |
T |
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| Q |
102 |
tttcgaagagattttgggttgccaatggattttagaactcattgggtgcataagtatcctcagctttttcgtgtggtgaaaccttctcttgatgatgttg |
201 |
Q |
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| T |
36809 |
tttcgaagagattttgggttgccaatggattttagaactcattgggtgcataagtatcctcagctttttcgtgtggtaaagccttctcttgatgatgttg |
36908 |
T |
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| Q |
202 |
agtttttggagcttgtttcttggaattctgaatgggctatcacagagattgagaagaagaataagatgattgtggaaggggtaactgaaaccgaacatac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
36909 |
agtttttggagcttgtttcttggaattctgaatgggctatcacagagattgagaagaagaataagatgattatggaaggggtaaccgaaaccgaacatac |
37008 |
T |
|
| Q |
302 |
tccgggtttgctttctctgccatttcctttaaaatttcctgcaaattttaaaagggtgcatagttattatggtgaaaagataaaaatgtttcaggagagg |
401 |
Q |
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| T |
37009 |
tccgggtttgctttctctgccatttcctttgaaatttcctgcaaattttaaaagggtgcatagttattatggtgaaaagataaaaatgtttcaggagagg |
37108 |
T |
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| Q |
402 |
acttatttgtctccttatgccgatgcgaagggtttaaaac |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37109 |
acttatttgtctccttatgccgatgcgaagggtttaaaac |
37148 |
T |
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