View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5348_low_6 (Length: 416)

Name: NF5348_low_6
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5348_low_6
NF5348_low_6
[»] chr3 (12 HSPs)
chr3 (14-400)||(11497020-11497406)
chr3 (14-400)||(11490547-11490939)
chr3 (14-385)||(5052208-5052585)
chr3 (78-385)||(5966197-5966510)
chr3 (39-398)||(2919861-2920235)
chr3 (110-354)||(7491808-7492058)
chr3 (324-365)||(3886044-3886085)
chr3 (60-205)||(4130303-4130448)
chr3 (82-205)||(4114629-4114752)
chr3 (65-154)||(3913124-3913213)
chr3 (301-378)||(4091700-4091777)
chr3 (301-373)||(911071-911143)
[»] chr1 (2 HSPs)
chr1 (70-385)||(17312118-17312439)
chr1 (95-205)||(13933765-13933875)
[»] chr8 (1 HSPs)
chr8 (36-383)||(18388360-18388713)
[»] scaffold0603 (1 HSPs)
scaffold0603 (78-362)||(4268-4558)
[»] chr4 (1 HSPs)
chr4 (76-375)||(5988896-5989210)
[»] scaffold0267 (1 HSPs)
scaffold0267 (223-376)||(19223-19379)
[»] chr5 (1 HSPs)
chr5 (119-215)||(16447225-16447321)
[»] scaffold0137 (1 HSPs)
scaffold0137 (324-365)||(387-428)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 11497406 - 11497020
Alignment:
Q  14 tactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  11497406 tactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaactgaactaccactatctttctcctcctttaa 11497307  T
Q  114 aacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||| |||||||||||||||||||||||||||| ||    
T  11497306 aacggtgctttgcatattgctcaatttttccgaagaactccatcttagaaaaaaatgtgatagttcagctgtggattgcagaaggcttagtagaatcgtc 11497207  T
Q  214 catagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggtgaagaaaactttgaaatgcaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11497206 catagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggtgaagaaaactttgaaatgcaa 11497107  T
Q  314 aaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacataacctacataaaggggtacataat 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11497106 aaccttatccatgatttagctacaatggtttcatcttcatactgtatcaggttggacgaacataacctacataaaggggtacataat 11497020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 11490939 - 11490547
Alignment:
Q  14 tactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaa 113  Q
    |||||||||||||||||||| ||||||||||||||||   ||  |||| | ||||||||||||||||||||||||||||| ||||| ||  |||||||||    
T  11490939 tactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctaccattatctatcggctcctttaa 11490840  T
Q  114 aacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatc 213  Q
    ||| |||||||| |||||| ||||||||||||||||| ||||||||||       || | ||||||||||||||||| ||  ||| || |||||||||||    
T  11490839 aacagtgctttgaatattgttcaatttttccgaagaagtccatcttagaaaaaaatgtggtagttcagttgtggattacaagagggttggtagaatcatc 11490740  T
Q  214 catagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggt------gaagaaaactttgaa 307  Q
    |   || ||||||||||||||| ||||||||||||||  |||||| ||| | ||||| ||| ||||||  |||||||||      ||||||| |||||||    
T  11490739 cgcggaccaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgttaataaatcgacaatctattggtgatgaggaagaaatctttgaa 11490640  T
Q  308 atgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacataacctacataaaggggtacataat 400  Q
    ||| | | ||| | | |||| |||||| ||||| ||||||||||||| |||| ||||||||| ||||| ||||||||| || || ||||||||    
T  11490639 atgtatagcctcaccaatgaattagctacaatgatttcatcttcatattgtaccaggttggatgaacagaacctacatgaaaggatacataat 11490547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 5052208 - 5052585
Alignment:
Q  14 tactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaa 113  Q
    |||||||||||||||||||| ||||||||||||||||   ||   |||| ||| |||||||| ||||||| ||||||| | | ||||||  |||||||||    
T  5052208 tactggaataatgtgctaatacgtgacatttgggaattggtacaatatgtcgtccaacctgcgctacaatcgagctacaattctctttcagctcctttaa 5052307  T
Q  114 aacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatc 213  Q
    ||| |||||||| |||||| ||||||||||||||||| | ||||||||       || | | ||||||||||||||||||||||| || |||||||| ||    
T  5052308 aacagtgctttgaatattgttcaatttttccgaagaaatacatcttagaaaaaaatgtggtggttcagttgtggattgcagaagggttggtagaatcctc 5052407  T
Q  214 catagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattgg------tgaagaaaactttgaa 307  Q
    |  ||||||||||||||||||| |||| |||||||||  |||||| ||| | ||||||||||||||||  ||||||||       |||| ||||||||||    
T  5052408 cgcagatcaggaaaaagtcggagaagagtactttgatgaactagtgtcaagatcgttgatacatcgacaatctattggcaatgaggaagcaaactttgaa 5052507  T
Q  308 atgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacataacctacat 385  Q
    ||||| | |||  |||||||||| ||  ||||||||||||||||||| |||| ||||||||||||||| ||| |||||    
T  5052508 atgcatagcctcctccatgattttgccacaatggtttcatcttcatattgtaccaggttggacgaacagaacttacat 5052585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 78 - 385
Target Start/End: Original strand, 5966197 - 5966510
Alignment:
Q  78 tacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagt 177  Q
    ||||| ||| ||| |||||||||||  ||| |||||||   |||||||||||||| ||||||||||||||||| |||||| |||       |  | ||||    
T  5966197 tacaactgaactatcactatctttcgactcttttaaaaaactgctttgcatattgttcaatttttccgaagaagtccatcatagaaaaaaatttggtagt 5966296  T
Q  178 tcagttgtggattgcagaaggcttagtagaatcatccatagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacat 277  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||  |||||||||||||| ||||||| ||| |||| ||| | |||    
T  5966297 tcagttgtggattgcagaaggcttagtagaatcgtccataaaccaggaaaaagttggtgaagaatactttgatgtactagtgtcaaggtcattgctgcat 5966396  T
Q  278 cgacggtctattggt------gaagaaaactttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacg 371  Q
    | ||  |||||||||      ||| |||||||||||||||| |  ||| |||||||||||||| ||  |||||||||| || |||| ||||   ||| ||    
T  5966397 caacaatctattggtaatgaggaacaaaactttgaaatgcatacacttgtccatgatttagctacagaggtttcatctccacactgcatcaatatgggcg 5966496  T
Q  372 aacataacctacat 385  Q
    |||||||| |||||    
T  5966497 aacataacttacat 5966510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 398
Target Start/End: Original strand, 2919861 - 2920235
Alignment:
Q  39 acatttgggaatcaataggttatgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaat 138  Q
    ||||| ||||||  |||| |||||| || ||| | | ||||||||||||||||  |||||||||  ||||||||||||| |||||||||||||| |||||    
T  2919861 acattggggaattgatagattatgaggtccaagccggtctacaattgagctacttctatctttcgactcctttaaaacgctgctttgcatattgttcaat 2919960  T
Q  139 ttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatccatagatca---------ggaaaaa 229  Q
    |||||| ||| | ||||||||||          | ||||||||||||||||||||||||||||||||||||| |||| |  |||         |||||||    
T  2919961 ttttccaaaggagtccatcttagaaaaaaagagggtagttcagttgtggattgcagaaggcttagtagaatcttccacaagtcaggcaagttcggaaaaa 2920060  T
Q  230 gtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggt------gaagaaaactttgaaatgcaaaaccttatcc 323  Q
    || ||  |||||||||||||||||||||| ||| ||||||| |||||  |||| ||||||| |      |||| ||  ||||||||| | ||| | | ||    
T  2920061 gttggggaagaatactttgatatactagtgtcaaggtcgttaatacagagacgatctattgatggcgaggaagcaaggtttgaaatgaataacttcaccc 2920160  T
Q  324 atgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacataacctacataaaggggtacata 398  Q
    ||||||||||  ||| |||||||| | |||||||||||||||| ||| |||| | | ||||| || |||||||||    
T  2920161 atgatttagcctcaagggtttcatatccatactgtatcaggtttgacaaacaaatcttacatgaaagggtacata 2920235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 354
Target Start/End: Complemental strand, 7492058 - 7491808
Alignment:
Q  110 ttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaat 209  Q
    ||||||||||| |||| |||||| || |||||||| ||||| ||||||||||       |  | |||||||||||||||||||||||||||| |||||||    
T  7492058 ttaaaacggtgttttgaatattgttctatttttccaaagaagtccatcttagaaaaaaatatgttagttcagttgtggattgcagaaggctttgtagaat 7491959  T
Q  210 catccatagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggt------gaagaaaactt 303  Q
    | | || |||||| |||||| | ||| |||||||||||||| |||| || ||| | ||||||||||||||| | |||||||||      |||| |||| |    
T  7491958 cgtacacagatcatgaaaaatttggagaagaatactttgatgtacttgtgtcaagttcgttgatacatcgatgatctattggtaataaggaagcaaacgt 7491859  T
Q  304 tgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcata 354  Q
    |||| |||| ||||| | ||||||||||||| ||| |||||| ||||||||    
T  7491858 tgaagtgcataacctcacccatgatttagctacaacggtttcgtcttcata 7491808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 3886044 - 3886085
Alignment:
Q  324 atgatttagctgcaatggtttcatcttcatactgtatcaggt 365  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  3886044 atgatttagctacaatggtttcatcttcatactgtatcaggt 3886085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 4130303 - 4130448
Alignment:
Q  60 atgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatctt 159  Q
    |||| |||||||| ||||| | ||||||||| |   ||||| || ||||| ||||| | |||||||| ||||| |||||||||||||||||||| ||| |    
T  4130303 atgaggtgcaaccagctctgctattgagctatcgtcatcttcctgctcctataaaaggatgctttgcttattgttcaatttttccgaagaactcaatcat 4130402  T
Q  160 agnnnnnnntgcgatagttcagttgtggattgcagaaggcttagta 205  Q
    ||          | ||||||| ||||||||||||||||||||||||    
T  4130403 agagaaaaaaatggtagttcaattgtggattgcagaaggcttagta 4130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 4114752 - 4114629
Alignment:
Q  82 attgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcag 181  Q
    ||||||||| |  |||||| || ||||||||||| | |||||||| || || |||||||||||||||||||| || ||||       |  | | ||||||    
T  4114752 attgagctatcgttatcttcctgctcctttaaaaagatgctttgcttactgttcaatttttccgaagaactcaattttagagaaaaatatggtcgttcag 4114653  T
Q  182 ttgtggattgcagaaggcttagta 205  Q
    ||||||||||||||||| ||||||    
T  4114652 ttgtggattgcagaaggtttagta 4114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 3913213 - 3913124
Alignment:
Q  65 gtgcaacctgctctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactcc 154  Q
    |||| ||| ||||| | ||||||||| ||||||||| || ||||||| || || || ||||| ||||| ||||||||||| |||||||||    
T  3913213 gtgctaccggctcttctattgagctatcactatcttcctgctcctttgaagcgatgttttgcttattgttcaatttttccaaagaactcc 3913124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 4091777 - 4091700
Alignment:
Q  301 ctttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacataa 378  Q
    ||||||||||||  |||| ||| ||||||||||| | || ||||||||| | || ||||| |||||||| ||||||||    
T  4091777 ctttgaaatgcatgacctcatcaatgatttagctacgatagtttcatctccttattgtattaggttggaagaacataa 4091700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 373
Target Start/End: Complemental strand, 911143 - 911071
Alignment:
Q  301 ctttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaa 373  Q
    ||||||||||||  |||| ||  ||||||||||| |||||||||||| | |||| ||||| | ||||||||||    
T  911143 ctttgaaatgcacgacctcattaatgatttagctacaatggtttcatatccatattgtatgatgttggacgaa 911071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 70 - 385
Target Start/End: Original strand, 17312118 - 17312439
Alignment:
Q  70 acctgctctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnnt 169  Q
    ||||||||||||||||||||||   ||||||     |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||       |    
T  17312118 acctgctctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatattgttcaatttttccgaagaaatccatcttagaaaaaaat 17312217  T
Q  170 gcgatagttcagttgtggattgcagaaggcttagtagaatcatccatagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgt 269  Q
    ||| ||||||| ||||||||||||||||| || |||||||| |||  ||||||||||||||||||| ||||||||||||||  |||||| ||| | ||||    
T  17312218 gcggtagttcaattgtggattgcagaagggttggtagaatcgtccgcagatcaggaaaaagtcggagaagaatactttgatgaactagtgtcaagatcgt 17312317  T
Q  270 tgatacatcgacggtctattgg------tgaagaaaactttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatcag 363  Q
    ||||||||||||| ||||||||       |||| ||||||||||||||| | |||  |||||||||| ||| ||||||||||||||||||| |||| | |    
T  17312318 tgatacatcgacgatctattggcaatgaggaagcaaactttgaaatgcatagcctcctccatgatttggctacaatggtttcatcttcatattgtacctg 17312417  T
Q  364 gttggacgaacataacctacat 385  Q
    |||||||| ||| ||| |||||    
T  17312418 gttggacggacagaacttacat 17312439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 13933765 - 13933875
Alignment:
Q  95 tatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcag 194  Q
    |||||| || ||||||||||| | |||||||| || || |||||||||||||||||||| |||||||       |  | |||||||||||||||||||||    
T  13933765 tatcttcctgctcctttaaaaggatgctttgcttactgttcaatttttccgaagaactcaatcttagagaaaaatatggtagttcagttgtggattgcag 13933864  T
Q  195 aaggcttagta 205  Q
    |||| ||||||    
T  13933865 aaggtttagta 13933875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 36 - 383
Target Start/End: Original strand, 18388360 - 18388713
Alignment:
Q  36 gtgacatttgggaatcaataggttatgacgtgcaacctgctctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctc 135  Q
    |||||||||||||||   ||| |||||| ||||| | |||||||||||||| ||||   ||||| ||  |||||||||||||||||||||||| ||| ||    
T  18388360 gtgacatttgggaattggtagattatgatgtgcaccgtgctctacaattgatctacagttatctatcgactcctttaaaacggtgctttgcattttgttc 18388459  T
Q  136 aatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatccatagatcaggaaaaagtcgga 235  Q
    |||||| || ||||| |||||||||        || | ||||||||||||||||||||||||||||| ||||||| | |  ||| ||||||||||||| |    
T  18388460 aattttcccaaagaagtccatcttaaaaaaaattgtggtagttcagttgtggattgcagaaggcttattagaatcgttcgcagaccaggaaaaagtcgca 18388559  T
Q  236 aaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggt------gaagaaaactttgaaatgcaaaaccttatccatgatt 329  Q
     ||||||||||||||  |||||| ||| |||| |||||||||| ||  || ||||||      |||| |||||||||||||||  ||||  | |||||||    
T  18388560 gaagaatactttgatgaactagtgtcaaggtctttgatacatcaacaatcaattggtgatggggaagcaaactttgaaatgcatgacctcgttcatgatt 18388659  T
Q  330 tagctgcaatggtttcatcttcatactgtatcaggttggacgaacataacctac 383  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  18388660 tagctacaaaggtttcatcttcatattgtatcaggttggacgaacagaacctac 18388713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 78 - 362
Target Start/End: Complemental strand, 4558 - 4268
Alignment:
Q  78 tacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagt 177  Q
    ||||| |||||||||| |||||| |  ||||||||||||| |||||||  ||||| ||||||||||| ||||| |||||| |||       |  || |||    
T  4558 tacaactgagctaccaatatcttccaactcctttaaaacgatgctttgagtattgttcaatttttccaaagaagtccatcatagaaaaaaatttgacagt 4459  T
Q  178 tcagttgtggattgcagaaggcttagtagaatcatccatagatcaggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacat 277  Q
    |||||||||||||||||||||||||||| |||| |||| | | ||||||||||| ||| |||||||||||| | || |||| ||| |||| |||||||||    
T  4458 tcagttgtggattgcagaaggcttagtaaaatcgtccacaaaccaggaaaaagttggagaagaatactttgctgtattagtgtcaaggtcattgatacat 4359  T
Q  278 cgacggtctattggt------gaagaaaactttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtatca 362  Q
    ||||| |||||||||      |||| ||||||||||||||| |||||  ||||||||||||||  || |||||||||| || | |||||||    
T  4358 cgacgatctattggtgatggggaagcaaactttgaaatgcataacctggtccatgatttagctataaaggtttcatctccaaattgtatca 4268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 76 - 375
Target Start/End: Original strand, 5988896 - 5989210
Alignment:
Q  76 tctacaattgagctaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgata 175  Q
    ||||||||||||||||    |||||||  ||||||||||| | |||||||||||||| ||||||||||| ||| | ||| ||||||          | ||    
T  5988896 tctacaattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgagggta 5988995  T
Q  176 gttcagttgtggattgcagaaggcttagtagaatcatccatagatca---------ggaaaaagtcggaaaagaatactttgatatactagtatcatggt 266  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||         ||||||||| ||| |||||||||||||||||||||| ||| |||    
T  5988996 gttcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggt 5989095  T
Q  267 cgttgatacatcgacggtctattggtga------agaaaactttgaaatgcaaaaccttatccatgatttagctgcaatggtttcatcttcatactgtat 360  Q
    | |||||||| || || ||||||| |||      ||||| |||||||||| | ||||| ||||||||||||||| |||||||| |||||  ||| |||||    
T  5989096 cattgatacaacggcgatctattgatgatgaagaagaaatctttgaaatgaataacctcatccatgatttagctacaatggttgcatctcaatattgtat 5989195  T
Q  361 caggttggacgaaca 375  Q
    |||||| ||||||||    
T  5989196 caggttagacgaaca 5989210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 376
Target Start/End: Original strand, 19223 - 19379
Alignment:
Q  223 ggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtctattggtg---aagaaaactttgaaatgcaaaacctt 319  Q
    ||||||||| ||| ||||||||||||||  |||||| ||| ||||  |||||| ||| |||| ||||| ||   |||||  || |||||||||  |||||    
T  19223 ggaaaaagtaggagaagaatactttgatgaactagtgtcaaggtcactgatacgtcgtcggtatattgatggggaagaatgctatgaaatgcatgacctt 19322  T
Q  320 atccatgatttagctgcaatggtttcatcttcatactgtatcaggttggacgaacat 376  Q
     || ||||||||||| |||||||||||||| |||| || |||| ||| |||||||||    
T  19323 gtcaatgatttagctacaatggtttcatctccatattgcatcaagttagacgaacat 19379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 16447225 - 16447321
Alignment:
Q  119 tgctttgcatattgctcaatttttccgaagaactccatcttagnnnnnnntgcgatagttcagttgtggattgcagaaggcttagtagaatcatcca 215  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||         ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  16447225 tgctttgcatattgttcaaattttccaaagaattccatcttagaaaagaagacgataattcagttgtggattgcagaaggtttagtagaatcgtcca 16447321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 387 - 428
Alignment:
Q  324 atgatttagctgcaatggtttcatcttcatactgtatcaggt 365  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  387 atgatttagctacaatggtttcatcttcatactgtatcaggt 428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University