View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5348_low_8 (Length: 364)
Name: NF5348_low_8
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_8 |
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| [»] scaffold0819 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 10775300 - 10775472
Alignment:
| Q |
82 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
180 |
Q |
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| T |
10775300 |
aactactacatctgcaaatcttcaaattgttaattgtacaactgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
10775399 |
T |
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| Q |
181 |
gtagttaatacgaacagaaaaatatatgcgttagtactcttatgcttctacaatgtagtgacttcttatgaat |
253 |
Q |
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| T |
10775400 |
gtagttactacgaacagaaatttatatgtattaatactcttatatttctacaatctagtgacttcttatgaat |
10775472 |
T |
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Target: scaffold0819 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0819
Description:
Target: scaffold0819; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 4752 - 4578
Alignment:
| Q |
82 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
180 |
Q |
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| T |
4752 |
aactactacatctgcaaatctgcaaattgttaattgtacaagtgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
4653 |
T |
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| Q |
181 |
gtagttaatacgaacagaaaaatatatgcgtta--gtactcttatgcttctacaatgtagtgacttcttatgaat |
253 |
Q |
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| T |
4652 |
gtagttactacgaacagaaatttatatgtattaatatactcttatatttctacaatctagtgacttcttatgaat |
4578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 21856013 - 21856050
Alignment:
| Q |
24 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
61 |
Q |
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| T |
21856013 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
21856050 |
T |
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