View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5348_low_9 (Length: 344)
Name: NF5348_low_9
Description: NF5348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5348_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 40804178 - 40804497
Alignment:
| Q |
10 |
acatcatcaagggattaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgctta |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40804178 |
acatcatcaagggactaaaacaaaagagaaacataattggtaatatatttgaatctcaacacagtcaaagaacatatttaaactcagtcattaatgctta |
40804277 |
T |
|
| Q |
110 |
atcaattattgactcaactcaagtttttaagaggaaagataagtgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40804278 |
atcaattattgactcaactcaagtttttaagaggaaagataagcgactggtcataaatcattggtgtttcaagcctaataaagggaacaatacatatcaa |
40804377 |
T |
|
| Q |
210 |
tttcttgacaatgacgaccctttaatatctttgtttcttcatccactaggtaccaaagaagcttgattcatcccaagattttcatacaactttttcatgc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40804378 |
tttcttgacaatgacgaccctttaatatctttgtttcttcatccactaggtaccaaagaagcttgattcatcccaagattttcatacaacttttttatgc |
40804477 |
T |
|
| Q |
310 |
acctccaagttgttgaatct |
329 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
40804478 |
acctccaagttgttgaatct |
40804497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 5115847 - 5115901
Alignment:
| Q |
169 |
attggtgtttcaagcctaataaagggaacaatacatatcaatttcttgacaatga |
223 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
5115847 |
attggtgtttcaagcccaataacaggaacaagacatatcattttcttgacaatga |
5115901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University