View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349-Insertion-1 (Length: 897)
Name: NF5349-Insertion-1
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 3e-78; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 170 - 348
Target Start/End: Original strand, 491688 - 491863
Alignment:
| Q |
170 |
gagggataccgatagatttaatgttgaaagaagctctccaagattgagtgacgtgattttaagtggaaaacaactagagatttctccaagaagctcgtct |
269 |
Q |
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| T |
491688 |
gagggataccgatagatttaatgttgcaagaagctctccaagattgagtgacgtgattttaagtggaaaac---tagagatttctccaagaagctcgtct |
491784 |
T |
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| Q |
270 |
aggtcaccgcaaaagtaagagaggtcgagggaggaattccagataatgagttagaaacgggaaaggttgatgatgtata |
348 |
Q |
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| T |
491785 |
aggtcaccgcgaaagtaagagaggtcgagggaggaattccagataatgagtgagaaacgggaacggttgatgatgtata |
491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 714 - 869
Target Start/End: Original strand, 493041 - 493196
Alignment:
| Q |
714 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattcaaaagtctcaagccaacatccgcg |
813 |
Q |
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| T |
493041 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattctaaagtctcaagccaatatccgcc |
493140 |
T |
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| Q |
814 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
869 |
Q |
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| T |
493141 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
493196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 434 - 553
Target Start/End: Original strand, 491943 - 492058
Alignment:
| Q |
434 |
aacattcattccttcattgcattataagaatctttgacatgctctctctaggcttcatcactgttgagttttttctgatccagatgtgctcaattggctt |
533 |
Q |
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| T |
491943 |
aacatacattccttcattgcattataagaatctttgacatgctct----aggcttcatcactgttgagttttttctgatccagatgtgctcaattggctt |
492038 |
T |
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| Q |
534 |
aaacacaaactaatatttct |
553 |
Q |
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| T |
492039 |
aaacacaaactaacatttct |
492058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 611 - 726
Target Start/End: Original strand, 492784 - 492899
Alignment:
| Q |
611 |
atgtatttccttcgtggttgttccccttgaatcaagaaaatttacttttatcataaaaagaattaaaaatttactttatttgtannnnnnnnngctttta |
710 |
Q |
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| T |
492784 |
atgtatttccttcgtggttgttccccttgaatcaagaaaatttacttttatcataaaaagaattaaaaatttactttatttgtatttttttttgctttta |
492883 |
T |
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| Q |
711 |
ttaatatatatgagta |
726 |
Q |
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| T |
492884 |
ctaatatatatgagta |
492899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 542 - 613
Target Start/End: Original strand, 492087 - 492158
Alignment:
| Q |
542 |
actaatatttctggtccatggaactcttctaatcatatatgcatcaactttcgtcattttattttctacatg |
613 |
Q |
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| T |
492087 |
actaatatttctggtccatggaactcttctaatcatatatgcatcaactttcgtcatgttattttctacatg |
492158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 491062 - 491147
Alignment:
| Q |
6 |
caaggcaaacaaaaccatagcgaagtattcacagttggcaagtcgaaac-----aaaataaaaatcatgtcagttttaaaataaat |
86 |
Q |
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| T |
491062 |
caaggcaaacaaaaccatagcgaaatattcacagttggcaagtcgaaacaaaataaaataaaaatcatgtcagttgtaaaataaat |
491147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 491615 - 491652
Alignment:
| Q |
94 |
tatctccttaattaaaatttgaccaataccttcctcag |
131 |
Q |
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| T |
491615 |
tatctccttaattaaaatttgaccaataccttcctcag |
491652 |
T |
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