View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349-Insertion-2 (Length: 571)
Name: NF5349-Insertion-2
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 8 - 571
Target Start/End: Original strand, 29564591 - 29565154
Alignment:
| Q |
8 |
aattttagacctaggaggtaggaataatgttttttagctttcacataggctggtgataagtctaaataaagcttgtaaaatttagacaatccttacactg |
107 |
Q |
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| T |
29564591 |
aattttagacctaggaggtaggaataatgttttttagctttcacataggctagtgataagtctaaataaagcttataaaatttagacaatccttacactg |
29564690 |
T |
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| Q |
108 |
caagatgattttgtaaggtcgagttaggtcaaaatcctcgaatatcatcttacgttaaaataggttatgatataagttggttttgtagggctgatttaga |
207 |
Q |
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| T |
29564691 |
caagatgattttgtaaggtcgagttaggtcaaaatcctcgaatatcatcttacgttagaatatgttatgatataagttggttttgtagggctgatttaga |
29564790 |
T |
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| Q |
208 |
cttaaacattgtgttgccatcttaagttagaatacatttcctgcagattatttctactaggcctaaagaagtatggcaaaggtgattggagaaatatttc |
307 |
Q |
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| T |
29564791 |
ctaaaacattgtgttgccatcttaagttagaatacatttcctgcagattatttctactaggcctaaagaagtatggcaaaggtgattggagaaatatttc |
29564890 |
T |
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| Q |
308 |
gcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataagacaactttcaggaggaaaagacaagaggagagca |
407 |
Q |
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| T |
29564891 |
gcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataagacaactttcaggaggaaaagacaagaggagagca |
29564990 |
T |
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| Q |
408 |
agcatacatgacataacaacagttaatctttcagaaaaaattggaacttgttcttcagaagacaccagtaatagatccacttcaccacaaaattctatct |
507 |
Q |
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| T |
29564991 |
agcatacatgacataacaacagttaatctttcagaaaaaattggaacttgttcttcagaagacaccagtaatagatccacttcaccacaaaattctatct |
29565090 |
T |
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| Q |
508 |
tactttcacaccagcagcagcaacaacaaacttcgactgtgacaaattttcgttggaggaataa |
571 |
Q |
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| T |
29565091 |
tactttcacaccagcagcagcaacaacaaacttcgactgcgacaaattttcgttggaggaataa |
29565154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 35090876 - 35090973
Alignment:
| Q |
276 |
aagtatggcaaaggtgattggagaaatatttcgcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataag |
373 |
Q |
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| T |
35090876 |
aagtatggcaaaggcgactggagaaacatctcgcgcaatttcgtcgtgacaaagactccaacacaagtagcaagtcatgcacaaaagtactacataag |
35090973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 276 - 436
Target Start/End: Original strand, 25116919 - 25117079
Alignment:
| Q |
276 |
aagtatggcaaaggtgattggagaaatatttcgcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataagac |
375 |
Q |
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| T |
25116919 |
aagtatggaaaaggtgattggagaaacatttcaaggaactttgtgatcactaggacaccaacacaagtagctagccatgctcagaaatatttcatcagac |
25117018 |
T |
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| Q |
376 |
aactttcaggaggaaaagacaagaggagagcaagcatacatgacataacaacagttaatct |
436 |
Q |
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| T |
25117019 |
aactttcaggaggcaaagacaaaagaagagcaagcattcatgacataacaacagttaatct |
25117079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 276 - 404
Target Start/End: Original strand, 24521975 - 24522103
Alignment:
| Q |
276 |
aagtatggcaaaggtgattggagaaatatttcgcgcaatttcgtcatcacgagaacaccaactcaagtagcaagccatgctcaaaagtatttcataagac |
375 |
Q |
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| T |
24521975 |
aagtatggcaagggagattggagaaacatctctaggaatttcgtgaccacaaggacaccaactcaagtcgcaagtcatgctcagaagtatttcattaggc |
24522074 |
T |
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| Q |
376 |
aactttcaggaggaaaagacaagaggaga |
404 |
Q |
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| T |
24522075 |
agctttcaggagggaaggataagaggaga |
24522103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 34848489 - 34848529
Alignment:
| Q |
327 |
agaacaccaactcaagtagcaagccatgctcaaaagtattt |
367 |
Q |
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| T |
34848489 |
agaacaccaacacaagttgcaagccatgctcaaaagtattt |
34848529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 46325941 - 46325981
Alignment:
| Q |
330 |
acaccaactcaagtagcaagccatgctcaaaagtatttcat |
370 |
Q |
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| T |
46325941 |
acaccaacacaagtagcaagtcatgcacaaaagtatttcat |
46325981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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