View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349-Insertion-3 (Length: 308)
Name: NF5349-Insertion-3
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 38835111 - 38835360
Alignment:
| Q |
8 |
cttgctggctgcagtgcgatctcaaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgt |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835111 |
cttgctggctgcggtgcgatctcaaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgt |
38835210 |
T |
|
| Q |
108 |
tagcagcactgtccagtatagaaccgctacttttcttgttaaatggag-ctccctcatcttcctcacttttcttctctggtgaagtagctggtactttca |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
38835211 |
tagcagccctgtccagtatagaaccgctacttttcttgttaaatggagactccctcatcttcctcac-tttcttctctggtgaagtagct-gtactttca |
38835308 |
T |
|
| Q |
207 |
gctgactgcaaacatattcagtaa--aatatttgacc--atgtttgtctggtgc |
256 |
Q |
| |
|
||||||| ||||||| ||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
38835309 |
gctgact-aaaacata-tcagtaaataatttttgacccaatgtttgtctggtgc |
38835360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 9869558 - 9869763
Alignment:
| Q |
8 |
cttgctggctgcagtgcgatctcaaccacctcattctttgctataggagagttagaagcagaaccagcagacaaatcttcaatttgatttgtatccttgt |
107 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| || ||| ||||||||||||||| ||| || | ||||||||| ||||| || || ||||| ||| |
|
|
| T |
9869558 |
cttgctggctgaggtgcaatctcaaccacctcatcctctgcagtaggagagttagaagtagagccctcggacaaatctgcaattggacttatatccatgt |
9869657 |
T |
|
| Q |
108 |
tagcagcactgtccagtatagaaccgctacttttcttgttaaatggag-ctccctcatcttcctcacttttcttctctggtgaagtagctggtactttca |
206 |
Q |
| |
|
|||||| || ||| ||||||||| ||| |||||||||||||| | ||||||||| || ||||| ||||||||||||||| ||| || |||||||| |
|
|
| T |
9869658 |
tagcagttttgcccaatatagaacc---actcttcttgttaaatggtgactccctcatttttctcac-tttcttctctggtgatgtacct-atactttca |
9869752 |
T |
|
| Q |
207 |
gctgactgcaa |
217 |
Q |
| |
|
|||| |||||| |
|
|
| T |
9869753 |
gctggctgcaa |
9869763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University