View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349-Insertion-6 (Length: 170)
Name: NF5349-Insertion-6
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 6e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 33721162 - 33720999
Alignment:
| Q |
7 |
attcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggt |
106 |
Q |
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| T |
33721162 |
attcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggt |
33721063 |
T |
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| Q |
107 |
tccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggt |
170 |
Q |
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| T |
33721062 |
tccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggt |
33720999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 33719143 - 33718980
Alignment:
| Q |
7 |
attcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggt |
106 |
Q |
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| T |
33719143 |
attcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccgtggtaaaggt |
33719044 |
T |
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| Q |
107 |
tccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggt |
170 |
Q |
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| T |
33719043 |
tccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggt |
33718980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 33735816 - 33735654
Alignment:
| Q |
7 |
attcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggt |
106 |
Q |
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| T |
33735816 |
attcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggt |
33735717 |
T |
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| Q |
107 |
tccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatgg |
169 |
Q |
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| T |
33735716 |
tccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatgg |
33735654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 33750614 - 33750453
Alignment:
| Q |
9 |
tcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtggtaaaggttc |
108 |
Q |
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| T |
33750614 |
tcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttc |
33750515 |
T |
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| Q |
109 |
caagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggt |
170 |
Q |
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| T |
33750514 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggt |
33750453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 39360450 - 39360347
Alignment:
| Q |
66 |
ttgtcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttcccc |
165 |
Q |
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| T |
39360450 |
ttgtcgtaagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaactccttttcttggatcacgaatctctgcagcccattttcccc |
39360351 |
T |
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| Q |
166 |
atgg |
169 |
Q |
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|||| |
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| T |
39360350 |
atgg |
39360347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 50102277 - 50102306
Alignment:
| Q |
140 |
acgaatctcagcagcccattttccccatgg |
169 |
Q |
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| T |
50102277 |
acgaatctcagcagcccattttccccatgg |
50102306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 45437432 - 45437332
Alignment:
| Q |
69 |
tcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatg |
168 |
Q |
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| T |
45437432 |
tcgtaggctcttgcagcttcttcagcagtgttgaaagttccgagccaaacacgaactccttttctcgggtcacggatctcagctgcccattttccccatg |
45437333 |
T |
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| Q |
169 |
g |
169 |
Q |
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| T |
45437332 |
g |
45437332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 169
Target Start/End: Complemental strand, 8584950 - 8584919
Alignment:
| Q |
138 |
tcacgaatctcagcagcccattttccccatgg |
169 |
Q |
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| T |
8584950 |
tcacgaatctcagcagcccatttgccccatgg |
8584919 |
T |
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