View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_1 (Length: 575)
Name: NF5349_high_1
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Original strand, 36693296 - 36693840
Alignment:
| Q |
13 |
attctacaccaatatatatgtaaaaataaaataacaaattcttcatgtaaatcttaatcatattttttacaaaagtttctttctttacttacattaagat |
112 |
Q |
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| T |
36693296 |
attctacaccactatatatgtaaaaataaaataacaaattcttcatgtaaatcttaatcatattttttacaaaagtttct--ctttacttacattaagat |
36693393 |
T |
|
| Q |
113 |
taagatgattgattaatttattagttggtaacatgttagcatttaagaactcccattatgtgtcaagtttgtagaaggctagttaattataataacatgt |
212 |
Q |
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| T |
36693394 |
taagatgattgattaatttattagttggtaacatgttagcatttaggaactcccattatgtgtcaagtttgtagaaggctagttaattataataacatgt |
36693493 |
T |
|
| Q |
213 |
tgaggtccactactatcactgcatgtttgtggaatttctttttcatcatctgcagcaactttactttccttgttcttaaattttgctaagatggataatt |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36693494 |
tgaggtcccctactatcactgcatgtttgtggaatttctttttcatcatctgcagcaactttactttccttgttcttaaattttgctaaggtggataatt |
36693593 |
T |
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| Q |
313 |
cttgtattgattctgcaagtttttcagtggaagaaactacatcaagcaataatgaagccacagttacaacaggaacaacctcaaacaaatttgtgtcttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693594 |
cttgtattgattctgcaagtttttcagtggaagaaactacatcaagcaataatgaagccacagttacaacaggaacaacctcaaacaaatttgtgtcttc |
36693693 |
T |
|
| Q |
413 |
ccacagttttgttttgatcatggaccttaggtttgtggcataaatcttagatgttgcaatgtgagtttctgctgaggttggtggaaccattttgtggatt |
512 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36693694 |
ccacaattttgttttgatcatggaccttaggtttgtggcataaatcttagatgttgcaatgtgagtttctgctgaggttggtggagccattttgtggatt |
36693793 |
T |
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| Q |
513 |
gatattgataattgctttaaagcttttccagtttccatgctcatctt |
559 |
Q |
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| T |
36693794 |
gatattgataattgctttaaagcttttccagtttccatgctcatctt |
36693840 |
T |
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