View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5349_high_11 (Length: 326)

Name: NF5349_high_11
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5349_high_11
NF5349_high_11
[»] chr2 (2 HSPs)
chr2 (12-159)||(18712453-18712600)
chr2 (160-313)||(18714658-18714811)
[»] chr3 (2 HSPs)
chr3 (163-313)||(30435124-30435278)
chr3 (25-69)||(6892427-6892471)
[»] chr5 (2 HSPs)
chr5 (164-313)||(17318542-17318691)
chr5 (24-159)||(16407104-16407239)
[»] chr8 (1 HSPs)
chr8 (49-101)||(10875961-10876013)
[»] chr6 (2 HSPs)
chr6 (37-82)||(24286820-24286865)
chr6 (25-69)||(5669185-5669229)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 18712453 - 18712600
Alignment:
Q  12 atacttggaagatgtgatggtaaaaatgaattttccgactttgtggcctaagtggattttagaaggtgtaactacgacaatgacatcagtgcttgtgaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18712453 atacttggaagatgtgatggtaaaaatgaattttccgactttgtgacgtaagtggattttagaaggtgtgactacgacaatgacatcagtgcttgtgaat 18712552  T
Q  112 gacagttcaactaaagaatttaagatggaaagaggccttcgtcaagga 159  Q
    |||||||| |||||| |||||||||||||||||||| |||||||||||    
T  18712553 gacagttcgactaaataatttaagatggaaagaggctttcgtcaagga 18712600  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 18714658 - 18714811
Alignment:
Q  160 aactgggaaatgtcggtgccatatcatatatgataccgcattcacaacctgactgtcatctgatgtgagcatatggtaagtgctatgcacagagtaagca 259  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  18714658 aactgggacatgtcggtgccatatcatatctgataccacattcacaacctgactgtcatctgatgtgagcatatggtaagtgctacgcacagagtaaaca 18714757  T
Q  260 tcactatcctcaagccttgacctccactaatcagagagctgaacttgcaaagta 313  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  18714758 tcactatcctcaagccttcacctccactgatcagagagctgaacttgccaagta 18714811  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 30435124 - 30435278
Alignment:
Q  163 tgggaaatgtcggtgccatatcatatatgataccgcattcacaacctgactgtcatctgatgtgagcatat----ggtaagtgctatgcacagagtaagc 258  Q
    ||||| |||||| ||||||||| ||| ||||||||  ||||||||||||||||||| || |||||||||||    |||||| |||| ||||||||||  |    
T  30435124 tgggacatgtcgatgccatatcgtatctgataccgtgttcacaacctgactgtcatttgttgtgagcatatggccggtaagcgctacgcacagagtatac 30435223  T
Q  259 atcactatcctcaagccttgacctccactaatcagagagctgaacttgcaaagta 313  Q
    | || |||||||||||||  ||||||||| ||||||||| ||||| |||||||||    
T  30435224 accattatcctcaagcctccacctccactgatcagagagttgaacctgcaaagta 30435278  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 6892427 - 6892471
Alignment:
Q  25 gtgatggtaaaaatgaattttccgactttgtggcctaagtggatt 69  Q
    |||||||| |||||||||||||||||| | |||| ||||||||||    
T  6892427 gtgatggtgaaaatgaattttccgactctttggcgtaagtggatt 6892471  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 17318542 - 17318691
Alignment:
Q  164 gggaaatgtcggtgccatatcatatatgataccgcattcacaacctgactgtcatctgatgtgagcatatggtaagtgctatgcacagagtaagcatcac 263  Q
    |||| ||||| |||||| |||||||  || || || | |||||| |||||| ||| || ||||||||||||||||| |||| ||||||||| |||| | |    
T  17318542 gggacatgtctgtgccaaatcatatccgaaactgcgtccacaacatgactgacatttgttgtgagcatatggtaagcgctacgcacagagtgagcaccgc 17318641  T
Q  264 tatcctcaagccttgacctccactaatcagagagctgaacttgcaaagta 313  Q
    |||||||||||||  ||||||||| ||||||||| ||||| |||||||||    
T  17318642 tatcctcaagcctccacctccactgatcagagagttgaacctgcaaagta 17318691  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 16407104 - 16407239
Alignment:
Q  24 tgtgatggtaaaaatgaattttccgactttgtggcctaagtggattttagaaggtgtaactacgacaatgacatcagtgcttgtgaatgacagttcaact 123  Q
    ||||||| | |||||||||||| ||||| | |||| |||||||||||||||| ||||||||||  |   | || || | |||||||||| |||  | ||     
T  16407104 tgtgatgattaaaatgaattttacgactctatggcgtaagtggattttagaatgtgtaactacaccgtcggcaccaatacttgtgaatggcagcccgaca 16407203  T
Q  124 aaagaatttaagatggaaagaggccttcgtcaagga 159  Q
     | |||||||| ||||||||||||||||||||||||    
T  16407204 gatgaatttaaaatggaaagaggccttcgtcaagga 16407239  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 10876013 - 10875961
Alignment:
Q  49 actttgtggcctaagtggattttagaaggtgtaactacgacaatgacatcagt 101  Q
    |||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||    
T  10876013 actttgtggcgtaagtggattatagaatgtgtaattacgagaatgacatcagt 10875961  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 24286820 - 24286865
Alignment:
Q  37 atgaattttccgactttgtggcctaagtggattttagaaggtgtaa 82  Q
    ||||||||||| || ||||||| |||||||||||||||| ||||||    
T  24286820 atgaattttccaacattgtggcataagtggattttagaatgtgtaa 24286865  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 5669229 - 5669185
Alignment:
Q  25 gtgatggtaaaaatgaattttccgactttgtggcctaagtggatt 69  Q
    |||||||| |||||||||||||||||| | |||| ||||||||||    
T  5669229 gtgatggtgaaaatgaattttccgactctttggcgtaagtggatt 5669185  T

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