View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_12 (Length: 289)
Name: NF5349_high_12
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 9729279 - 9729009
Alignment:
| Q |
1 |
gtaacatcaacctttgtacacataactttcaatagtaacatgttacatattatgacatgtaacatgtgtcatgcatgtgccatatttttatacatgcagg |
100 |
Q |
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| T |
9729279 |
gtaacatcaacctttgtacacataactttcaatagtaacatgttacatattatgacatgtcacatgtgtcatgcatgtgccatatttttatacatgcagg |
9729180 |
T |
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| Q |
101 |
gaatttcgcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaagaga |
200 |
Q |
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| T |
9729179 |
gaattttgcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaagaga |
9729080 |
T |
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| Q |
201 |
cattgttgagtctagattcacagaatagggatgagaatcaacaaattcatgtgacttaacaaacatgtcac |
271 |
Q |
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| T |
9729079 |
cattgttgagtctagattcacagaatagggatgagaatcaacaaactcatgtgacttaacaaacatgtcac |
9729009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 7756194 - 7756099
Alignment:
| Q |
108 |
gcaacatggtaaagaagattttcatttgttcaaatgaggaattaaagaaaatgaaatgcaagttacctaattcttcattagagattgaagagacatt |
204 |
Q |
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| T |
7756194 |
gcaacatggtaaagaagattttcatttgttcaaaa-atgaattaaagaaaattaaatgcaagctacctaattcttcatcagagattgaagagacatt |
7756099 |
T |
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