View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_17 (Length: 256)
Name: NF5349_high_17
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 41104879 - 41104970
Alignment:
| Q |
76 |
cgcgccaaccaattataatctacaccgtctcccctaaggtaatccacaccacacccggggacttcatgaacctcgtccaacgtctcaccgga |
167 |
Q |
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| T |
41104879 |
cgcgccaaccaattataatctacaccgtctcccctaaggtaatccacaccacacccggggacttcatgaacctcgtccaacgtctcaccgga |
41104970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 41105006 - 41105044
Alignment:
| Q |
200 |
gtcttcatcatcaaatattgatcctttccgcggggatgg |
238 |
Q |
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| T |
41105006 |
gtcttcatcatcaaatattgatcctttccgcggggatgg |
41105044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 41104821 - 41104853
Alignment:
| Q |
18 |
atcaagaaaccaccattggcgccacagcagcag |
50 |
Q |
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| T |
41104821 |
atcaagaaaccaccattggcgccacagcagcag |
41104853 |
T |
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