View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349_high_23 (Length: 238)
Name: NF5349_high_23
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1787367 - 1787144
Alignment:
| Q |
1 |
ctcttgttcaatggaaaggattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagatt-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1787367 |
ctcttgttcaatggaaaggattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagattaa |
1787268 |
T |
|
| Q |
99 |
nnnnnnnntagggcgttcttccggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1787267 |
aaaaaaaatagggcgttcttccggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
1787168 |
T |
|
| Q |
199 |
nnnnnnnttctagatttggaacgt |
222 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1787167 |
aaaaaaattctagatttggaacgt |
1787144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 53283514 - 53283708
Alignment:
| Q |
1 |
ctcttgttcaatggaaaggattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagattnn |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53283514 |
ctcttgttcaatggaaatgattttcctttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaacgggccattttgtaaagattaa |
53283613 |
T |
|
| Q |
101 |
nnnnnntagggcg----ttcttccggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatct |
191 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53283614 |
aaaaaatagggcgttctttcttccggtgttttgatccgagtagaggtgtcatggaactcttttcttggttaataaataatctgaaacttggatct |
53283708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 46280386 - 46280196
Alignment:
| Q |
1 |
ctcttgttcaatggaaaggattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtaaagatt-n |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46280386 |
ctcttgttcaatggaaaagattttactttcacaagattttaattaatttttaacttgcttgatttgtaaacatgaaaatgggccattttgtgaagattaa |
46280287 |
T |
|
| Q |
100 |
nnnnnnntagggcgttcttccggtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatctaaaacttggatctatagcat |
198 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
46280286 |
aaaaaaataggg--------cagtgtttcgatccgagtagaggtgctatggaactcttttcttggttaataaataatatgaaacttggatctatagcat |
46280196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University