View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349_high_26 (Length: 236)
Name: NF5349_high_26
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 1787657 - 1787782
Alignment:
| Q |
104 |
cgaaggaaaaccgataagagtcgctgaaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttgaatgcttattattattaattaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1787657 |
cgaaggaaaaccgataagagtcgctgaaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttgaatgcttattattattaattaatt |
1787756 |
T |
|
| Q |
204 |
agattaaacgtggtgagtttcctatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1787757 |
agattaaacgtggtgagtttcctatg |
1787782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1787554 - 1787620
Alignment:
| Q |
1 |
atgttttgggttagttggggtttcaacaaggtagaactgacacggataaagggttgaagacgaaatt |
67 |
Q |
| |
|
||||||||||||| |||| |||||| ||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
1787554 |
atgttttgggttatgtgggtcttcaaccgggtcgaactgacccgtataaagggttgaagacgaaatt |
1787620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 46280720 - 46280769
Alignment:
| Q |
130 |
aaaaccggtgactcggccggtttaggagccaatcggtttaacaaactttg |
179 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46280720 |
aaaatcggtgactcggccggtttaggagtcaatcggtttaacaaactttg |
46280769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University