View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349_high_3 (Length: 540)
Name: NF5349_high_3
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_3 |
 | |
|
| [»] scaffold0374 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 524
Target Start/End: Original strand, 37165786 - 37166302
Alignment:
| Q |
8 |
tatcaaaggttacttgtaacagacgtgtaaaatttaggtagattttgttagtaatagttagtttgttgattctctactagcttgatatatagagaatctc |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37165786 |
tatcaaaggttacttgtaacggacgtgtaaaatttaggtagattttgttagtaatagttagtttgttgattctctactagcttgataaatagagaatctc |
37165885 |
T |
|
| Q |
108 |
atgtatttatttaccatcttttattcctatctatcaagctttcaagttattttccctataagatgaatcttaatctctttaatcctgtgatttgtaacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37165886 |
atgtatttatttaccatcttttattcctatctatcaagctttcaagttattttccctataagatgaatcttaatctctttaatcctgtgatttgtaacaa |
37165985 |
T |
|
| Q |
208 |
tttgcgtattagatgacctggtgcgtgaccaaaagtttcgtgagtgtgtgtatcagatgaccatgatacttgagttataatgattatatctatcataacg |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37165986 |
tttgcgtattagatgacctggcgcgtgaccaaaagtttcgtgagtgtgtttatcagatgaccttgatacttgagttataatgattatatctatcataacg |
37166085 |
T |
|
| Q |
308 |
catataaattatacgcgttatgagagtaaaatttaaacgttattagagtgtgtcgtgtgttcgaactattaattagcttaccaaaagttgcggattggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37166086 |
catataaattatacgcgttatgagagtaaaatttaaacgttattagagtgtgtcgtgtgttcgaactattaattagcttaccaaaagttgcggattggaa |
37166185 |
T |
|
| Q |
408 |
agtggtccaaccatcaaccacgctacgattaccggtgatgatagtccgaccaatgccatctccaacgatcattagattctctttactcttaggaatagaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37166186 |
agtggtccaaccatcaaccacgctacgattaccggtgatgatagtccgaccaatgccatctccaacgatcattagattctctttactcttaggaatagaa |
37166285 |
T |
|
| Q |
508 |
atatactcgctataaat |
524 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37166286 |
atatactcgctataaat |
37166302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 14267 - 14215
Alignment:
| Q |
62 |
tagttagtttgttgattctctactagcttgatatatagagaatctcatgtatt |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| | || ||||||| |||||||||||| |
|
|
| T |
14267 |
tagttagtttgttgattctctagtaggtctatttatagagcatctcatgtatt |
14215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University