View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_5 (Length: 515)
Name: NF5349_high_5
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 20933687 - 20933252
Alignment:
| Q |
19 |
ataagtgcttatgataaaaactacaaattaggtgtttatccaaacagacccaaagtgtcataatttggcacgagaacaaatataatgttgtgtgataggt |
118 |
Q |
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| T |
20933687 |
ataagtgcttatgataaaaactacaaataaggtgtttatccaaacagacccatagtgtcataatttggcacgagaacaaatataatgttgtgtgataggt |
20933588 |
T |
|
| Q |
119 |
cagtccatacagaattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaaatta |
218 |
Q |
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| T |
20933587 |
cagtccatacagaattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaaataa |
20933488 |
T |
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| Q |
219 |
tatgcaataatattctgaatgtgttacgcctacgacaaacaaaaacattaattaatttgaaaacataataataaagaagtaaggaattgaaatgaacgag |
318 |
Q |
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| T |
20933487 |
tatgcaataatattctgaatgtgttacgcctacgacaaacaaaaacattaattaatttgaaaacataataataaagaagtaaggaattgaaatgaacgag |
20933388 |
T |
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| Q |
319 |
aagtagtggaagaaagaaataatgaaga---------------accgaaaaatggaatgggaataaggagtggttccaatttagggtttacacagt-act |
402 |
Q |
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| T |
20933387 |
aagtagtggaagaaagaaataatgaagaaccaaaaatcttcttaccgaaaaatggaatgggaataaggagtggttccaatttagggtttacacagtaact |
20933288 |
T |
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| Q |
403 |
gtacggtcaacgagtcaacagtagggaacaactcaa |
438 |
Q |
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| T |
20933287 |
gtacggtcaacgagtcaacagtagggaacaactcaa |
20933252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 324
Target Start/End: Complemental strand, 20952210 - 20952029
Alignment:
| Q |
131 |
aattaacacatgaaatgcaaattgaactcagaaagaaattagagagttaccatgtgaagttaccgattgagtagttccaggaaaattatatgcaataata |
230 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| | |||||||| |
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| T |
20952210 |
aattaaaacatggaatgcaaattgaactcagaaagaaattagagaattaccatgagaagttaccgattgagaagttccaggaaaattagacgcaataatc |
20952111 |
T |
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| Q |
231 |
ttctgaatgtgttacgcctacgacaaacaaaaacattaattaatttgaaaacataataataaagaagtaaggaattgaaatgaacgagaagtag |
324 |
Q |
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| T |
20952110 |
ttct-aatgtg--attgctacaccaaacaaaaacattaattagtttgaaaa---------aaataagaaaggaattgaaatgaacgagaagtag |
20952029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 500
Target Start/End: Complemental strand, 20933257 - 20933206
Alignment:
| Q |
449 |
actcaaaactagacatatatttgaacaattattctttaatggcttgtatatc |
500 |
Q |
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| T |
20933257 |
actcaaaactagacatatatttgtagaattattctttaatggcttgaatatc |
20933206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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