View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_7 (Length: 393)
Name: NF5349_high_7
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_7 |
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| [»] scaffold0130 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0130 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 16878 - 17268
Alignment:
| Q |
1 |
aatatatatacacaatctatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagcgtttatgctccgagag |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16878 |
aatatatatacacaatctttagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacatgtagcgtttatgctccgagag |
16977 |
T |
|
| Q |
101 |
gaacgtatgataaccaaaccaagcaagtactatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaata |
200 |
Q |
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|||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16978 |
gaacgtatgatagtcaaacccagcaagtgctatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgtcagaaaaata |
17077 |
T |
|
| Q |
201 |
gatggaagatatataatatcgattaaagacaaattatgaagtcctgagttgtcactaattacttttgaagtatttgaagacatatatcagccctatacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17078 |
attggaagatatataatatcgattaaagacaaattatgaagtcctgagttgtcactaattacttttgaagtatttgaagacatatatcagccc--tacat |
17175 |
T |
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| Q |
301 |
aaaagatcaagaatatagaaccgtgttgttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttatatgggttccttt |
393 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
17176 |
aaaagatcaagaatatagaaccttgtcgttaattttcttttgaatgacgccgcttcggtccttgctgctttgagcatttatccgggttccttt |
17268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 4281020 - 4281390
Alignment:
| Q |
1 |
aatatatatacacaatctatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagcgtttatgctccgagag |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
4281020 |
aatatatatacacaatttatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagtgtctatgctccgagag |
4281119 |
T |
|
| Q |
101 |
gaacgtatgataaccaaaccaagcaagtactatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaata |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281120 |
gaacgtatgataaccaaaccaagcaagtgctatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaata |
4281219 |
T |
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| Q |
201 |
gatggaagatatataatatcgattaaagacaaattatgaagtcctgagttgtcactaattacttttgaagtatttgaagacatatatcagccctatacat |
300 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281220 |
gttggaagatat----------ttaaagacaaattatgaagtcctgagttgttactaattacttttgaagtatttgaagacatatatcagccctatacat |
4281309 |
T |
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| Q |
301 |
aaaagatcaagaatatagaaccgtgttgttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttat |
381 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281310 |
aaaagatcaagaatatagaaccttgtcgttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttat |
4281390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 17595382 - 17595001
Alignment:
| Q |
1 |
aatatatatacacaatctatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagcgtttatgctccgagag |
100 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17595382 |
aatatatacacacaatctatagtagtatacatgcaccaaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttatgctccgagag |
17595283 |
T |
|
| Q |
101 |
gaacgtatgataaccaaaccaagcaagtactatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaata |
200 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
17595282 |
gaacgtatgataatcaaaccaagcaagtgctatgaattaattgaagaaatatagaacctggatggttttctttaatatgcacctatgcgccacaaaaata |
17595183 |
T |
|
| Q |
201 |
gatggaagata--tataatatcgattaaagacaaattatgaagtcctgagttgtcactaattacttttgaagtatttgaagacatatatcagccctatac |
298 |
Q |
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| ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17595182 |
gttggaagatatatataatattgattaaagacaaattatgaagtcctgagttgtcattaattacttttgaagtatttgaa-acatatatcagccctatac |
17595084 |
T |
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| Q |
299 |
ataaaagatcaagaatatagaaccgtgttgttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttat |
381 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17595083 |
ataaaagatcaagaatatagaaccttgtcgttaattttcttttgaatgatgccgcttcggtccttgctgctttgagcatttat |
17595001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 26902794 - 26902952
Alignment:
| Q |
29 |
atatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagcgtttatgctccgagaggaacgtatgataaccaaaccaagcaagt |
128 |
Q |
| |
|
|||||||||||||| | |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||| |
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| T |
26902794 |
atatgcaccgaaaacatatgtgaaagtggagataacatcataaagtgacgtgtagcatttatgctccgagaggaacgtatgataatcaaattaagcgagt |
26902893 |
T |
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| Q |
129 |
actatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatg |
187 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
26902894 |
tctatgtattaattgaggaaatatagaatctggatggttttctttaatatgcatatatg |
26902952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 26902963 - 26903015
Alignment:
| Q |
329 |
ttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttat |
381 |
Q |
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|||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
26902963 |
ttaattttcttttgaatggtgccgcttcggtcctcgctgctttgagcatttat |
26903015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10775654 - 10775694
Alignment:
| Q |
2 |
atatatatacacaatctatagtagtatatatgcaccgaaaa |
42 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||| |
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| T |
10775654 |
atatatacacacaatctatagtagtatacatgcaccgaaaa |
10775694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 2 - 381
Target Start/End: Complemental strand, 12326346 - 12325970
Alignment:
| Q |
2 |
atatatatacacaatctatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagcgtttatgctccgagagg |
101 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||||||| | |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
12326346 |
atatatatacataatctatagttc---atatacaccgaaaacatatgtgaaagtggagataacatcataaagtgacgtgtagcatttatgctccgagagg |
12326250 |
T |
|
| Q |
102 |
aacgtatgataaccaaaccaagcaagtactatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgcgccagaaaaatag |
201 |
Q |
| |
|
||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
12326249 |
aacatatgataatcaaaccaagcgagtgctatgaattaattgaggaaatatagaacctggatggttttctttaatatgcatatatgtaccagaaaaatag |
12326150 |
T |
|
| Q |
202 |
atggaagatatataatatcgattaaagacaaattatgaagtcctgagttgtcactaattacttttgaagtatttgaagacatatatcagccctatacata |
301 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
12326149 |
ttggaagatatatgatatcgattaaagataaaatatgaagtcctgagttgttactaattacttttgaaatgtttgaagacatatatcagccctatacata |
12326050 |
T |
|
| Q |
302 |
aaagatcaagaatatagaaccgtgttgttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttat |
381 |
Q |
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|||||||| |||||||||||| ||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
12326049 |
aaagatcaggaatatagaaccttgtcattaattttcttttgaatggtgccgcttcggtcctcgctgctttgagcatttat |
12325970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 244 - 381
Target Start/End: Complemental strand, 20196726 - 20196589
Alignment:
| Q |
244 |
ctgagttgtcactaattacttttgaagtatttgaagacatatatcagccctatacataaaagatcaagaatatagaaccgtgttgttaattttcttttga |
343 |
Q |
| |
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||||||||||||||||||| |||||| | ||||||||||||| | |||||||||| | ||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
20196726 |
ctgagttgtcactaattacatttgaaatgtttgaagacatatttaagccctatacgttaaagatcaagaatatagaaccttgtcattaattttcttttga |
20196627 |
T |
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| Q |
344 |
atgatgccgcctcggtccttgctgctttgagcatttat |
381 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||| |
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| T |
20196626 |
atgatgccgcttcggtcctcgctgctttgagcatttat |
20196589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 31710551 - 31710486
Alignment:
| Q |
328 |
gttaattttcttttgaatgatgccgcctcggtccttgctgctttgagcatttatatgggttccttt |
393 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
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| T |
31710551 |
gttaattttcttttgaatgatgccgcttcgatccttgctgctttgagcatttatccgggttccttt |
31710486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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