View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349_high_8 (Length: 386)
Name: NF5349_high_8
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 7522085 - 7521731
Alignment:
| Q |
8 |
acaccatccttttagattatttaacccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtac |
107 |
Q |
| |
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|||||||||||| |||||| ||||| | |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7522085 |
acaccatcctttaagattagttaactgaaagagaactatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtac |
7521986 |
T |
|
| Q |
108 |
tctaagcaaggcaaattaatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaacca |
207 |
Q |
| |
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|| | |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
7521985 |
tccagacaaggcaaattatacatgttaaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaatcggataacttcaattcaacca |
7521886 |
T |
|
| Q |
208 |
aatttgtatataaattggccgaactagacaatttcacaccaccgaatccacttatttccaaggccttgatattggagtgcagaatgtcatgtagaattat |
307 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7521885 |
aatttgtatataaattggctgaattagacaatttcacaccaccgaatccacttatttccaagtccttgatattggagtgcagaatgtcatgtagaattat |
7521786 |
T |
|
| Q |
308 |
atcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaat |
362 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| | ||| ||||| |||||| |
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| T |
7521785 |
atcatctttttcaaactcattgccatcaccaacagtctgttcattccatttcaat |
7521731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 54 - 380
Target Start/End: Complemental strand, 7496381 - 7496055
Alignment:
| Q |
54 |
agtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaattaatcatacagaggcgtttgacatgcaaca |
153 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||||||| |
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| T |
7496381 |
agtgacgcacaaaatgatgatgagttatcactattgctatcattcactatgtactccaggcaaggcaacttatacatttggaggcgtttgacatgcaaca |
7496282 |
T |
|
| Q |
154 |
ttgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaaccaaatttgtatataaattggccgaactagacaatttcacaccaccgaa |
253 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |
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| T |
7496281 |
gtgagagtttgaaatattgcaatcttgtgcatttggatacatacaattcaaccaaatttgtacataaattggccgaactagacaatgtcacaccaccaaa |
7496182 |
T |
|
| Q |
254 |
tccacttatttccaaggccttgatattggagtgcagaatgtcatgtagaattatatcatctttttcaaaatcattgccatcaccaacagtgtcttccttc |
353 |
Q |
| |
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|||| ||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7496181 |
tccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatatcatctttttcaaaatcattgccatcaccaacagtgtcttccttc |
7496082 |
T |
|
| Q |
354 |
caattcaatatcaaatgatgatgatgt |
380 |
Q |
| |
|
||||||||| |||| ||||| ||||| |
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| T |
7496081 |
caattcaatgtcaatcgatgaagatgt |
7496055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 7720379 - 7720741
Alignment:
| Q |
8 |
acaccatccttttagattatttaacccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtac |
107 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
7720379 |
acaccatccttttagatttgttaacccaaaaagaaatatatctttaagtgacgcacaaaatgatgatgagttatcactattgttatcattaacaatgtac |
7720478 |
T |
|
| Q |
108 |
tctaagcaaggcaaattaatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaacca |
207 |
Q |
| |
|
|||| ||| ||||||| || ||| ||||| || | |||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||| |
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|
| T |
7720479 |
tctaggcatggcaaatcaaacatgtagaggtgtctaacatgcaacattgagagtttgaaatattgtaatcttgtgcaaccggataactccaattcaacca |
7720578 |
T |
|
| Q |
208 |
aatttgtatataaattggccgaactagacaatttcacaccaccgaatccacttatttccaaggccttgatattggagtgcaga---atgtcatgtagaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||||| |
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| T |
7720579 |
aatttgtatataaattggccgaactagacaatgtcacaccaccgaatccacttatttctaaggccttgatattggagtgcagaactatgtgatttagaat |
7720678 |
T |
|
| Q |
305 |
tatatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatatcaa |
367 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||| ||| || |||||||||||| |||| |
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|
| T |
7720679 |
tatatcatctttttcaaactcattgtcatcactaacaatgtgttgtttccaattcaatgtcaa |
7720741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 7484028 - 7483656
Alignment:
| Q |
8 |
acaccatccttttagattatttaacccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtac |
107 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |
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| T |
7484028 |
acaccatcctttaagattatttaactgaaagagaactatatatgtgagtgacgcacaaaatgatgatgagttatcactattgctatcattgattatgtac |
7483929 |
T |
|
| Q |
108 |
tctaagcaaggcaaattaatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaacca |
207 |
Q |
| |
|
|| | ||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| ||||| | || ||| |||| ||||||||||| |
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| T |
7483928 |
tccaggcaaggcaaattatacatgtcaaggcgtttgacatgcatcagtgagagttcaaaatattgcaatctcgaacagttgactaagcccaattcaacca |
7483829 |
T |
|
| Q |
208 |
aatttgtatataaattggccgaactagacaatttcacaccaccgaatccacttatttccaaggccttgatattggagtgcagaatgtcatgtagaattat |
307 |
Q |
| |
|
|||||| ||||||||| |||||| |||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7483828 |
aatttggtaataaattgggcgaacttgacaatgtcacaccaccgaatccacttattactaatgccttgatattggagtgcagaatgtcatgtagaattat |
7483729 |
T |
|
| Q |
308 |
atcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatatcaaatgatgatgatgt |
380 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| || ||||| |||||| |||| ||||| ||||| |
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|
| T |
7483728 |
ttcatccttttcaaactcattgccatcaccaacagtgtgttgtttccacttcaatctcaatcgatgaagatgt |
7483656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 7716549 - 7716911
Alignment:
| Q |
8 |
acaccatccttttagattatttaacccggaaagaagtatccatgtaagtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtac |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
7716549 |
acaccatcctttaagattatttaactcggaaagaaatatatctgtaagtgacgtacaaaatgatgatgagttatcactattgttatcattgactatgaac |
7716648 |
T |
|
| Q |
108 |
tctaagcaaggcaaattaatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaacca |
207 |
Q |
| |
|
|||| || || ||||||| ||| | ||||| ||||||||||||| |||||||| |||| |||| ||||||| | | | |||||||||||| ||||| |
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|
| T |
7716649 |
tctaggcgagccaaattatccatccggaggcacttgacatgcaacagtgagagttcaaaaaattgcaatcttgaaccaatcaataagttcaattgaacca |
7716748 |
T |
|
| Q |
208 |
aatttgtatataaattggccgaactagacaatttcacaccaccgaatccacttatttccaaggccttgatattggagtgcaga---atgtcatgtagaat |
304 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||| |||||| |||||| ||| |||| ||||||||||||||| |||||| ||||||| |
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|
| T |
7716749 |
aatttgttaataaattggctgaactagaaaatttcacaccaccaaatccatttatttgtaagccctttatattggagtgcagaaccatgtcaagtagaat |
7716848 |
T |
|
| Q |
305 |
tatatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatatcaa |
367 |
Q |
| |
|
||||||||||||||| || ||| || ||||||||||||||| | | |||||||||||| |||| |
|
|
| T |
7716849 |
tatatcatctttttccaagtcactggcatcaccaacagtgtgtacattccaattcaatgtcaa |
7716911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 54 - 362
Target Start/End: Complemental strand, 7530107 - 7529796
Alignment:
| Q |
54 |
agtgacgcacaaaatgatgatgagttatcactattgttatcattcactatgtactctaagcaaggcaaattaatcatacagaggcgtttgacatgcaaca |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
7530107 |
agtgacgcacaagatgatgatgagttatcactattgctatcattcactatgtactccaggcaaggcaaatttctcatgtagaggtctttgacatgcaatg |
7530008 |
T |
|
| Q |
154 |
ttgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaaccaaatttgtatataaattggccgaactagacaatttcacaccaccgaa |
253 |
Q |
| |
|
|| ||||| | |||||| ||||||||||||||| ||||||| || |||||||||||||| ||||||| | ||| |||||||||||||||||||||| |
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|
| T |
7530007 |
gtgcgagttggatatattgcaatcttgtgcaattgtataagtttaaatcaaccaaatttgttagtaaattgactgaattagacaatttcacaccaccgaa |
7529908 |
T |
|
| Q |
254 |
tccacttatttccaaggccttgatattggagtgcaga---atgtcatgtagaattatatcatctttttcaaaatcattgccatcaccaacagtgtcttcc |
350 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||| ||||||||||| |||||||| |
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|
| T |
7529907 |
tccacttattattaaggtcttgatattggagtgcagaagtatgtcttgtagaattatttcatctttttctaactcattggcatcaccaacattgtcttcc |
7529808 |
T |
|
| Q |
351 |
ttccaattcaat |
362 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7529807 |
ttccaattcaat |
7529796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 106 - 380
Target Start/End: Original strand, 7127211 - 7127479
Alignment:
| Q |
106 |
actctaagcaaggcaaattaatcatacagaggcgtttgacatgcaacattgagagtttaaaatattgtaatcttgtgcaattggataagttcaattcaac |
205 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||| |||| |||||||| ||||||||||| |
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|
| T |
7127211 |
actctaggcaaggcaaatcaatcatatagaggcgtttgacatgcaacagtgagagttcgaaatattgcaatcttttgcatttggataatttcaattcaac |
7127310 |
T |
|
| Q |
206 |
caaatttgtatataaattggccgaactagacaatttcacaccaccgaatccacttatttccaaggccttgatattggagtgcagaatgtcatgtagaatt |
305 |
Q |
| |
|
||||||| |||||| || ||||||||||| |||||||||| |||||| ||||| | || |||||||||||||||| ||||||||||||||||| |
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|
| T |
7127311 |
caaattt------aaattgaccaaactagacaatgtcacaccaccaaatccatttattgctaaatccttgatattggagtgtcgaatgtcatgtagaatt |
7127404 |
T |
|
| Q |
306 |
atatcatctttttcaaaatcattgccatcaccaacagtgtcttccttccaattcaatatcaaatgatgatgatgt |
380 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||| || |||||||||||| |||| ||||| ||||| |
|
|
| T |
7127405 |
atatcatccttttcaaactcattctcatcaccaacagtgtgttgtttccaattcaatgtcaatcgatgaagatgt |
7127479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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