View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_high_9 (Length: 383)
Name: NF5349_high_9
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 24 - 374
Target Start/End: Complemental strand, 9728988 - 9728638
Alignment:
| Q |
24 |
ggtttgagaagggaaatggagtgcttgattttatggaattttaacattacaacttcaaaattatggactacatgaagttggattttaggtactctttttg |
123 |
Q |
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| T |
9728988 |
ggtttgagaagggaaatggagtgcttgattttatggaattttaacattacaacttcaaaattatggactacatgaagttggattttaggtactctttttg |
9728889 |
T |
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| Q |
124 |
taaatatccnnnnnnnnnnnngttgggtaggctatgctatatagtgccattagcttgtaaacaaatatgcatttccctatctataatggattgtgtgtct |
223 |
Q |
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| T |
9728888 |
taaatatccttttttttttt-gttgggtaggctatgctatatagtgccattagcttgtaaacaaatatgcatttccctatctataatggattgtgtgtct |
9728790 |
T |
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| Q |
224 |
ttgatgtgttgaaaaaatctaaatatattttgacgtgttatac-taatttgtctctattatagacatgcacattcgacaagaaaagtagaataaataaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728789 |
ttgatgtgttgaaaaaatctaaatatattttgacgtattatacttaatttgtctctattatagacatgcacattcgacaagaaaagtagaataaataaca |
9728690 |
T |
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| Q |
323 |
atgacaaacaaattaaacgatttagcaaataaaaatagagtagtagaataat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728689 |
atgacaaacaaattaaacgatttagcaaataaaaatagagtagtagaataat |
9728638 |
T |
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