View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_11 (Length: 368)
Name: NF5349_low_11
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 44926817 - 44926476
Alignment:
| Q |
20 |
ggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926817 |
ggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaac |
44926718 |
T |
|
| Q |
120 |
ttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926717 |
ttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatc |
44926618 |
T |
|
| Q |
220 |
ccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926617 |
ccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccct |
44926518 |
T |
|
| Q |
320 |
atctcgtttggagagataagctctcgtcttatgttcttctca |
361 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44926517 |
atctcgtttgcagagataagctctcgtcttatgttcttctca |
44926476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 86 - 352
Target Start/End: Complemental strand, 44935191 - 44934925
Alignment:
| Q |
86 |
gaagagattgtggatgcagagacattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaa |
185 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
44935191 |
gaagtgatggtggatggagagacattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaa |
44935092 |
T |
|
| Q |
186 |
gtaatacacctttacatggcttcagaaccccatcccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtc |
285 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
44935091 |
gcaatacacctttacatggcttcagaaccccatcacctttgaatagatctggtcttctaaggggaagcataaccgcttcttgaagtgattctttaacatc |
44934992 |
T |
|
| Q |
286 |
atccaatgcaccaatatctgaaaaagtcacccctatctcgtttggagagataagctctcgtcttatg |
352 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||| |
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| T |
44934991 |
atccaaagcaccaatatctgaaaaagtcacctttatctcgtttgcagggataagctcttgtcttatg |
44934925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 45988643 - 45988311
Alignment:
| Q |
20 |
ggggaaacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaac |
119 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||||||||||||| | | ||| |||| |||| ||| ||||| | ||||||||||||||||| |
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| T |
45988643 |
ggggcaacctctgctgctagtgaaaacagagctcggacgttcttttcagcttgtccggaccactttgaattgatggtggacggagagacattgatgaaac |
45988544 |
T |
|
| Q |
120 |
ttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatc |
219 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
45988543 |
ttgctccagattcattagcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggcttcagaagcccatc |
45988444 |
T |
|
| Q |
220 |
ccctttgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccct |
319 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |
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| T |
45988443 |
gcctttgaatagatatggtcttctaaggggaagcataaccgcttcttgaagtgattctttaatatcatccaaagcaccaatatctgaaaaagtcacttct |
45988344 |
T |
|
| Q |
320 |
atctcgtttggagagataagctctcgtcttatg |
352 |
Q |
| |
|
||||| |||| || |||||||||| |||||||| |
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| T |
45988343 |
atctcatttgcagggataagctcttgtcttatg |
45988311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 39716201 - 39716282
Alignment:
| Q |
110 |
ttgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaata |
191 |
Q |
| |
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||||||||| |||||||||||||| |||| | |||||||| |||||||| ||||| || ||||| || || ||||| |||| |
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| T |
39716201 |
ttgatgaaatttgctccagcttcagttgctacagcctttgcaagcattgtttttcccgtgccagggggaccgaaaagcaata |
39716282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 338
Target Start/End: Original strand, 11094561 - 11094871
Alignment:
| Q |
25 |
aacctttgctgctagtgaaaacaaagctcggacgttcttttcaccgtttccaaaccaacatgaagagattgtggatgcagagacattgatgaaacttgct |
124 |
Q |
| |
|
|||||| |||||||| | |||||||||||||| ||||||||| | | ||| ||||| ||||| ||| ||||| ||||| || |||||||||||| |
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| T |
11094561 |
aaccttagctgctagcgtgaacaaagctcggacattcttttcatcttctccgaaccattttgaagtgatcgtggacatcgagacgttaatgaaacttgct |
11094660 |
T |
|
| Q |
125 |
ccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggcttcagaaccccatcccctt |
224 |
Q |
| |
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|| |||||||| ||||| |||||||| |||||||| ||||| |||||||| || || |||||||||| |||| |||||||||| |||| ||| |||| |
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| T |
11094661 |
cctgcttcattcgcaatcgcctttgctagcattgtttttccggtaccaggtggaccgaaaagtaatatacctctacatggctttagaagtcca---cctt |
11094757 |
T |
|
| Q |
225 |
tgaatatatctggtcttctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacccctatctc |
324 |
Q |
| |
|
|||| | ||||||||||||||||||||||| ||| |||||||| |||||||| | ||||| |||||||| ||||||| || || || |||||||| |
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| T |
11094758 |
tgaaaaggtctggtcttctaaggggaagcattactagctcttgaagcgattcttttatctcatctaatgcaccgatatctgcgaatgtaacacctatctc |
11094857 |
T |
|
| Q |
325 |
gtttggagagataa |
338 |
Q |
| |
|
|||| || ||||| |
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| T |
11094858 |
atttgcagggataa |
11094871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 32199839 - 32199764
Alignment:
| Q |
241 |
tctaaggggaagcataactgcttcttgaagtgattctttaacgtcatccaatgcaccaatatctgaaaaagtcacc |
316 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| || |||| ||||||| ||||| ||||||||||||| |
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|
| T |
32199839 |
tctaaggggaagtataaccgcttcttgaagtgattctttgacatcatttaatgcactaatatatgaaaaagtcacc |
32199764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 2489742 - 2489637
Alignment:
| Q |
107 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
206 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
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| T |
2489742 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
2489643 |
T |
|
| Q |
207 |
tcagaa |
212 |
Q |
| |
|
| |||| |
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|
| T |
2489642 |
ttagaa |
2489637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 41591244 - 41591320
Alignment:
| Q |
107 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaa |
183 |
Q |
| |
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||||| |||||||||||||||||||| |||||||| ||||| || |||||||| || || || |||||||| ||||| |
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| T |
41591244 |
acattaatgaaacttgctccagcttcctttgcaatggccttcgccagcattgttttcccagttccaggaggcccaaa |
41591320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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