View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5349_low_14 (Length: 288)
Name: NF5349_low_14
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_14 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0113 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 15063839 - 15064087
Alignment:
| Q |
43 |
tcataaataaacaacaacatcatcc---ttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaat |
139 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||| ||| ||||| || ||||||| |||||| |||| | ||||||||||||| |||||| |
|
|
| T |
15063839 |
tcataaatcaacaacaatatcatcaccattttcaccaatttaagctaaattctcaaagtaaacaacttaacatatatcaacaatgaaatt--tatgcatc |
15063936 |
T |
|
| Q |
140 |
aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaa-ttttcacaaatataccaa |
237 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||| ||||||||||| | || || |||||||||||||||| |||||| ||||||||| | | ||| |
|
|
| T |
15063937 |
aacaacaagttttcaacaactttcacatacccaaactcaccacttaattccaagcacaaaaattacacatataatcatcaatttttcacaattcaatcaa |
15064036 |
T |
|
| Q |
238 |
aatcattatgacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
|| | |||||| ||||||| ||||| | |||||||| ||||||||||||| |
|
|
| T |
15064037 |
aacaaatatgacccataagtcaaaaatatgattatagattattaggtagaa |
15064087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 288
Target Start/End: Original strand, 16217890 - 16218039
Alignment:
| Q |
140 |
aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacat--ataaccatcaattttcacaaatatacca |
236 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| ||| || |||||||||| |||| | || ||||||||| || || | || |
|
|
| T |
16217890 |
aacaacaagttttcaacaaatttcacatacccaaaatcaccacttaattataagcacgaaaatta-acatccaaaatcatcaattt-cataattcattca |
16217987 |
T |
|
| Q |
237 |
aaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
||| | |||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
16217988 |
aaacaaatatgacccataaaagaaaaacaagattatagcttattaagtagaa |
16218039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 22707575 - 22707484
Alignment:
| Q |
197 |
aaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||| | |||| | |||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
22707575 |
aaaattacacatatactcatcaattttcacaaataaatcaaaacaaatatgtcccataagctaaaaacatgattatagattattaggaagaa |
22707484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 12461461 - 12461691
Alignment:
| Q |
52 |
aacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatt |
151 |
Q |
| |
|
|||||||||| |||| ||||||| |||| ||| ||||| || |||| || |||||| |||| | |||||||||||||||| ||| |||||| || || |
|
|
| T |
12461461 |
aacaacaacaacatcattttcactaatttaagctaaattctcaaagtgaacaacttaacatatatcaacaatgaaatttat--gcatcaacaacgagttt |
12461558 |
T |
|
| Q |
152 |
tcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaatcattatgaca |
250 |
Q |
| |
|
||||||| ||||| | ||||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||| ||||| | |||||| |
|
|
| T |
12461559 |
tcaacaactttcatatacccaaattcaccacttaatttcaagcacgaaaattacacatataatcatcaattttcacaaatcattcaaaacaaatatgacc |
12461658 |
T |
|
| Q |
251 |
cataagtgaaaaacaagattatagcttattagg |
283 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| |
|
|
| T |
12461659 |
cataagctaaaaacatgattatagattattagg |
12461691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 22090455 - 22090596
Alignment:
| Q |
149 |
atttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaat-cattat |
246 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||| |||||| | || ||||||||||||||||||| ||||||||||||||| | | |||||| ||||| |
|
|
| T |
22090455 |
atttcaacaactttcacatacccaaattcactacttaattccaagcacgaaaattacacatataatcatcaattttcacaattcaaacaaaataaattat |
22090554 |
T |
|
| Q |
247 |
gacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
||| |||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
22090555 |
gacccataagctaaaaacatgattatagattattaggaagaa |
22090596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 22560 - 22297
Alignment:
| Q |
24 |
cacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaat |
123 |
Q |
| |
|
||||||||| | || |||||||| ||| ||||||||||||||| | ||||| |||| ||| |||| || ||||||| |||||| |||| | ||| ||| |
|
|
| T |
22560 |
cacataaatcatgaattcatcattaatcaacaacaacatcatcatattcactaatttaagctaaactctcaaagtaaacaacttaacatatatcaataat |
22461 |
T |
|
| Q |
124 |
gaaatttatatgcaataacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattt |
222 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| ||||||| || |||| ||||||||||| | | |||||| || ||||||||| ||| ||| | |
|
|
| T |
22460 |
gaaatt--tatgcatcaacaacaagttttcaacaactttcacatactcaaactcaccacttaattcaaatcacgaaagttgcacatataatcattaatct |
22363 |
T |
|
| Q |
223 |
tcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
|||||||| | ||||| | |||||| |||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
22362 |
tcacaaatcaaacaaaacaaatatgactcataagctaaaaacatgattatagattattaggaagaa |
22297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 16366876 - 16367111
Alignment:
| Q |
52 |
aacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaatttatatgcaataacaacaagatt |
151 |
Q |
| |
|
||||||||||||||| | |||||||||| ||| ||| | || ||||||| |||||| |||| | ||||||||||||| |||||| ||||| ||| || |
|
|
| T |
16366876 |
aacaacaacatcatcatcttcaccaatttaagctaatttctcaaagtaaacaacttaacatatatcaacaatgaaatt--tatgcatcaacaataagttt |
16366973 |
T |
|
| Q |
152 |
tcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaaatcattatgaca |
250 |
Q |
| |
|
||||||| |||| | ||||||| |||||||| || | || |||||| |||||||||||| ||||||||||||||| | | ||||| | |||||| |
|
|
| T |
16366974 |
tcaacaactttcgtatacccaaattcaccactcaattccaagaacgaaagttacacatataatcatcaattttcacaattcaatcaaaaaaagtatgacc |
16367073 |
T |
|
| Q |
251 |
cataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||| |||| |
|
|
| T |
16367074 |
cataagttaaaaacatgattatatattattaggaagaa |
16367111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 25559229 - 25559189
Alignment:
| Q |
242 |
attatgacacataagtgaaaaacaagattatagcttattag |
282 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25559229 |
attatgacccataagtgaaaaacaagattatagcttattag |
25559189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 26060007 - 26060092
Alignment:
| Q |
196 |
gaaaattacacatataaccatcaattttcacaaatataccaaaatcattatgacacataagtgaaaaacaagattatagcttatta |
281 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||| | |||| | |||||| ||||||| |||||||| |||||| |
|
|
| T |
26060007 |
gaaaattacacatataattatcaattttcacaaattaatcaaaacaaatatggcccataagctaaaaacatgattatagattatta |
26060092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 23341393 - 23341357
Alignment:
| Q |
245 |
atgacacataagtgaaaaacaagattatagcttatta |
281 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
23341393 |
atgacccataagtgaaaaactagattatagcttatta |
23341357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 288
Target Start/End: Original strand, 14264265 - 14264414
Alignment:
| Q |
140 |
aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaaatatgagtacgaaaattacacatataaccatcaattttcacaaatataccaaa |
238 |
Q |
| |
|
||||| ||| ||||||||| ||||||| || |||| ||||||||||| | || |||||||||| |||||||| ||| ||||||||| ||| | |||| |
|
|
| T |
14264265 |
aacaaaaagttttcaacaattttcacatactcaaattcaccacttaatttcaagcacgaaaattagacatataatcataaattttcaccaatcaatcaaa |
14264364 |
T |
|
| Q |
239 |
atcattatgacacataagtgaaaaacaagattatagcttattaggtagaa |
288 |
Q |
| |
|
| | |||||| |||| | ||||| | |||||||| ||||||||||||| |
|
|
| T |
14264365 |
acaaatatgacccatatgctaaaaatatgattatagattattaggtagaa |
14264414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 2281565 - 2281644
Alignment:
| Q |
52 |
aacaacaacatcatccttttcaccaattcaagttaaatcttccaagtaaaaaacttatcatacaacaacaatgaaattta |
131 |
Q |
| |
|
||||||| ||||||| ||| |||||||| ||| ||||| ||| |||| || |||||| |||| | ||||||||||||||| |
|
|
| T |
2281565 |
aacaacaccatcatcatttacaccaatttaagctaaattttcaaagtgaacaacttagcatatatcaacaatgaaattta |
2281644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 16015793 - 16015747
Alignment:
| Q |
140 |
aacaacaagatttcaacaaatttcaca-acccaaaatcaccacttaa |
185 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
16015793 |
aacaacaagttttcaacaattttcacatacccaaaatcaccacttaa |
16015747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22785177 - 22785114
Alignment:
| Q |
16 |
attcataacacataaattacgacttcatcataaataaacaacaacatcatccttttcaccaatt |
79 |
Q |
| |
|
||||||| ||||||| | | || |||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
22785177 |
attcatagcacataattcatgaattcatcattaatcaacaacaacatcatcattttcaccaatt |
22785114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University