View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_17 (Length: 267)
Name: NF5349_low_17
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 21426282 - 21426037
Alignment:
| Q |
1 |
ttcaataatagaagaaaccctctacaagaacctttaataatttcagggaaggttcggcgaggcttaaaatcaaggcttaatgaacgataagaagaatcat |
100 |
Q |
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| T |
21426282 |
ttcaataatagaagaaaccctctacaagaacctttaataatttcagggaaggttgggcgaggcttaaaatcaaggcttaatgaacgataagaagaatcat |
21426183 |
T |
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| Q |
101 |
catcgttaaaatctatggataggggttgagtataagcagaagcagctttgaagaccattattttatgtgtgggagaggcagcaagttgaaaatgtgaagt |
200 |
Q |
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| T |
21426182 |
catcgttaaaatctatggataggggttgagtataagcagaagcagctttgaagaccattattttatgtgtgggagaggcagcaagttgaaaatgtgaagt |
21426083 |
T |
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| Q |
201 |
tgaaaaatgaggatgagagatgatagaaagccataacttacagaca |
246 |
Q |
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| T |
21426082 |
tgaaaaatgaggatgagagatgatagaaagccataacttacagaca |
21426037 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 29856653 - 29856587
Alignment:
| Q |
178 |
gcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagac |
245 |
Q |
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| T |
29856653 |
gcagcaagatgaaaatgtgaagttgaaaa-tgaggatgagagatcatagaaatccataacttacagac |
29856587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 30120655 - 30120715
Alignment:
| Q |
163 |
ttatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatga |
223 |
Q |
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| T |
30120655 |
ttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagagatga |
30120715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 29260981 - 29260910
Alignment:
| Q |
163 |
ttatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccat |
234 |
Q |
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| T |
29260981 |
ttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagaaatgagagacagccat |
29260910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 7765335 - 7765276
Alignment:
| Q |
183 |
aagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca |
242 |
Q |
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| T |
7765335 |
aagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttaca |
7765276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7904745 - 7904687
Alignment:
| Q |
184 |
agttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca |
242 |
Q |
| |
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| T |
7904745 |
agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttaca |
7904687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 45372424 - 45372480
Alignment:
| Q |
186 |
ttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca |
242 |
Q |
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| T |
45372424 |
ttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttaca |
45372480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 41311468 - 41311549
Alignment:
| Q |
164 |
tatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagac |
245 |
Q |
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||||||||| || |||||||||||||||||||||| || |||| |||| |||||| | ||| |||||| |||||||||| |
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| T |
41311468 |
tatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaatagggatcagagattagagagagccatgacttacagac |
41311549 |
T |
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