View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_19 (Length: 252)
Name: NF5349_low_19
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 27268052 - 27268293
Alignment:
| Q |
11 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
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| T |
27268052 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27268151 |
T |
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| Q |
111 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaag |
210 |
Q |
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| T |
27268152 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactatatcctcaag |
27268251 |
T |
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| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatg |
252 |
Q |
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| T |
27268252 |
ctccttcacaggagaatccccccagccgtccctggtatcatg |
27268293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 21195517 - 21195758
Alignment:
| Q |
11 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
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| T |
21195517 |
cagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
21195616 |
T |
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| Q |
111 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaag |
210 |
Q |
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| T |
21195617 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
21195716 |
T |
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| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatg |
252 |
Q |
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| T |
21195717 |
ctccttcacaggagaattccccctgctgtccctggtatcatg |
21195758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 27251266 - 27251507
Alignment:
| Q |
11 |
cagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
110 |
Q |
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| T |
27251266 |
cagagatcttgctggatggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgt |
27251365 |
T |
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| Q |
111 |
ccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaag |
210 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
27251366 |
ccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaag |
27251465 |
T |
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| Q |
211 |
ctccttcacaggagaatccccccagccgtccctgatatcatg |
252 |
Q |
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| T |
27251466 |
ctccttcacaggagaattccccctgctgtccctggtatcatg |
27251507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
101 |
agaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgag |
162 |
Q |
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| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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