View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_20 (Length: 250)
Name: NF5349_low_20
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 45314446 - 45314609
Alignment:
| Q |
1 |
caaatctcctcacagggttggtaaacttgtcggttgataccctgtccgcttcatcgaccacatctgtttttatcttgcttgtttatgcttatattttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
45314446 |
caaatctcctcacagggttggtaaacttgtcgattgataccctgtccgcttcatcgaccatatctgtttttatcgtgcttgtttatgcttatattttatc |
45314545 |
T |
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| Q |
101 |
aactgtgattggaattgctgattattttggtataaagttaaaattttggtgaagaagctatttg |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45314546 |
aactgtgattggaattgctgattattttggtataaagttaaaattttggtgaagaagctatttg |
45314609 |
T |
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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 27760371 - 27760534
Alignment:
| Q |
1 |
caaatctcctcacagggttggtaaacttgtcggttgataccctgtccgcttcatcgaccacatctgtttttatcttgcttgtttatgcttatattttatc |
100 |
Q |
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||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27760371 |
caaatcttctcactgggttggtaaacttgtctgttgataccctgtctgcttcatcgaccacatctgtttttatcttgcttgtctatgcttatattttatc |
27760470 |
T |
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| Q |
101 |
aactgtgattggaattgctgattattttggtataaagttaaaattttggtgaagaagctatttg |
164 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27760471 |
aactgtgattggaattgctgattattttgatataaagttaaaattttggtgaagaagctatttg |
27760534 |
T |
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