View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_25 (Length: 238)
Name: NF5349_low_25
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27268303 - 27268524
Alignment:
| Q |
1 |
actaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaagcaacgacacaggtacagacaacaggcacgatactaacac |
100 |
Q |
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| T |
27268303 |
actaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaagcaacgacacaggtacagacaccaggcacgatactaacac |
27268402 |
T |
|
| Q |
101 |
gttcatatgctgaccaaagttgtatattgtattttgttatgtagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27268403 |
gttcatatgctgaccaaagttgtatattgtattttgttatgtagtttttgtctggtggacaatctgaggttgaagcaacgctcaacttgaatgccatgaa |
27268502 |
T |
|
| Q |
201 |
ccaatctccaaacccatggcac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
27268503 |
ccaatctccaaacccatggcac |
27268524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 21195861 - 21195941
Alignment:
| Q |
142 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcac |
222 |
Q |
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| T |
21195861 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcac |
21195941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 27251610 - 27251690
Alignment:
| Q |
142 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcac |
222 |
Q |
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| T |
27251610 |
tagtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggcac |
27251690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 49364097 - 49364019
Alignment:
| Q |
143 |
agtttttgtctggtggacaatctgaggttgaagcaaccctcaacttgaatgccatgaaccaatctccaaacccatggca |
221 |
Q |
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|||||||||| ||||||||||| || ||||||||||| || || | ||||| ||||||||| ||| ||||||||||| |
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| T |
49364097 |
agtttttgtcaggtggacaatcagaagttgaagcaactctaaatcttaatgctatgaaccaaagtcccaacccatggca |
49364019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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