View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_28 (Length: 230)
Name: NF5349_low_28
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7608733 - 7608510
Alignment:
| Q |
1 |
ttaaatatcataaatgtaggtcagtttaattggtagagagttgaatttttcctcccaagaatgtgaattcaactcttaatactaacgtggccacatcttt |
100 |
Q |
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| T |
7608733 |
ttaaatatcataaatgtaggtcagtttaattggtaaagagttgaattttttctcctaagaatgtgagttcaactcttaatactaacgtggccacatcttt |
7608634 |
T |
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| Q |
101 |
-------ggtgggtgatctctaagtatctctgtaaacattatttaaatcatgagacccaccat---gatcctggcgaactcttaggactcaacaatgaaa |
190 |
Q |
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| T |
7608633 |
aatctttggtgggtgatctctaagtatctctataaacattatttaaatcatgagaaccaccatattgatcttggcgaactcttaggactcaacaatgaaa |
7608534 |
T |
|
| Q |
191 |
gttgacttatttaataagaagttg |
214 |
Q |
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|||||||||||||||||||||||| |
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| T |
7608533 |
gttgacttatttaataagaagttg |
7608510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7608846 - 7608761
Alignment:
| Q |
1 |
ttaaatatcataaatgtaggtcagtttaattggtagagagttgaattttt-cctcccaagaatgtgaattcaactcttaatactaa |
85 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || | | || ||||||||||||||| |
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| T |
7608846 |
ttaaatatcataaatgtaggtcaggttaattggtaaagagttgaatttttccctcccaaaaactttagtttaactcttaatactaa |
7608761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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