View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_4 (Length: 526)
Name: NF5349_low_4
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 490598 - 490406
Alignment:
| Q |
66 |
tctttgacagaacaaaaagaagcgtagttaataaaagagttaaagaaacatgatgtaaattttttagggacaacaatatgatccatcaaatatatattca |
165 |
Q |
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| T |
490598 |
tctttgacagaacaaaaagaagcatagttaataaaagagttaaagaaacatgatgtaaatttttaagggacaacaatatgatc-atcaaatatatattca |
490500 |
T |
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| Q |
166 |
ccacggagaagaaagaaatggagataaagaaaatgacatttattagaaactagatgttctgaatgacaaaagttacttccttcaccacagaagg |
259 |
Q |
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| T |
490499 |
ccacagaaaagaaagaaatggagataaagaaaatgacatttattagaaactagatgttctgaatgacaaaagttacttccttcaccacagaagg |
490406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 359 - 514
Target Start/End: Complemental strand, 490306 - 490151
Alignment:
| Q |
359 |
tcataagtttgaaagtttcaataatcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaagtaggccatggtatttgaatcacaa |
458 |
Q |
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| T |
490306 |
tcataagtttgaaagtttcaataatcttcatcctatgctcagaatatatactgaacaaaggaccattttgaagaactaggccatggtacttgaatcacaa |
490207 |
T |
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| Q |
459 |
ccatgaactctttatattcaaaatcaacttctttgccatcaattccacaagccctt |
514 |
Q |
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| T |
490206 |
ccatgaactctttatattcaaaatcaacttctttgccatcaattccacaagccctt |
490151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 491056 - 490988
Alignment:
| Q |
1 |
tattcattttctaccaatgattttgttcatgttatcctgcttctctaactcttctattgttcttgtctt |
69 |
Q |
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| T |
491056 |
tattcattttctaccaatgattttggtcatgttatcctgcttctctaactcttctattgttcttgtctt |
490988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 1492590 - 1492628
Alignment:
| Q |
85 |
aagcgtagttaataaaagagttaaagaaacatgatgtaa |
123 |
Q |
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| T |
1492590 |
aagcatagttaataaaagagttaaagaaatatgatgtaa |
1492628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 1530660 - 1530705
Alignment:
| Q |
75 |
gaacaaaaagaagcgtagttaataaaagagttaaagaaacatgatg |
120 |
Q |
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| T |
1530660 |
gaacaaaaagaattatagttaataaaagagttaaagaaatatgatg |
1530705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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