View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_6 (Length: 500)
Name: NF5349_low_6
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 483
Target Start/End: Original strand, 4315213 - 4315681
Alignment:
| Q |
15 |
gagatgaagtaggcgcgtggaccagtcgccaggtgcagcgcgtgagcgtttgctacgtgcttttcctggtagaggtgtttctggacggagaaatgaagcg |
114 |
Q |
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| T |
4315213 |
gagatgaagtaggcgcgtggaccagtcgccaggtgcagcgcgtgagcgtttgctacgtgcttttcctggtagaggtgtttctggacggagaaatgaagcg |
4315312 |
T |
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| Q |
115 |
ttacgagcggtttcgtcagtggaaaatgacggaagtgtgtcggtggaagatgaagattccggtgtttgcggtttaaccgcaccggcgccggagagaagtt |
214 |
Q |
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| T |
4315313 |
ttacgagcggtttcgtcagtggaaaatgacggaagtgtgtcggtggaagatgaagattccggtgtttgcggtttaaccgcaccggcgccggagagaagtt |
4315412 |
T |
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| Q |
215 |
gcaatgttttcaattcttcttcagcggagtatgaatcttccacgaaattcgaaagccattccagttccgccatatcatcatactgtgaagaaaatattca |
314 |
Q |
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| T |
4315413 |
gcaatgttttcaattcttcttcagcggagtatgaatcttccacgaaattcgaaagccattccagttccgccatatcatcatactgtgaagaaaatattca |
4315512 |
T |
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| Q |
315 |
aattcagtttcataattgatgaaattattaagaactaaactcgaaattgaacttcaattatcttcaattacggttaaattaagctgaattagtgacatta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315513 |
aattcagtttcataattgatgaaattattaagaactaaactcgaaattgaacttgaattatcttcaattacggttaaattaagctgaattagtgacatta |
4315612 |
T |
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| Q |
415 |
ttacttaccggaacacagagttcaccggtgagttgaacatcaccggaaaaaccataaggaacaattgtg |
483 |
Q |
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| T |
4315613 |
ttacttaccggaacacagagttcaccggtgagttgaacatcaccggaaaaaccataaggaacaattgtg |
4315681 |
T |
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