View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5349_low_7 (Length: 394)
Name: NF5349_low_7
Description: NF5349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5349_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Complemental strand, 3039407 - 3039040
Alignment:
| Q |
16 |
agattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3039407 |
agattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtctttttcaggaaacttgattttgagtttaac |
3039308 |
T |
|
| Q |
116 |
aagtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaagg |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3039307 |
aaggttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaagg |
3039208 |
T |
|
| Q |
216 |
tggataaggttaggcttggaaatcttgatagcaatgaaaactcttcttcaacttccattatgcatcatgtaagtgatgccaaacatggtacgtcatttgt |
315 |
Q |
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| T |
3039207 |
ttgataaggttaggtttggaaatcttgatagcaatgaaaactcttcttcaacttccattatgcatcatgtaagtgatgccaaacatggtacgtcatttgt |
3039108 |
T |
|
| Q |
316 |
tatgttccttgctttttaatctatgaaaatagcatgcatcttaaaaattctatgcaattcatgatatt |
383 |
Q |
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| T |
3039107 |
tatgttccttgctttttaatctatgaaaatagcatgcatcataaaaattctatgcagttcatgatatt |
3039040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 383
Target Start/End: Complemental strand, 3021084 - 3020721
Alignment:
| Q |
17 |
gattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaaca |
116 |
Q |
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| T |
3021084 |
gattcaaaagggttatatcaaaccatgtttttgaagccttctgaagatggagcagaaagagaacttttatttttcaagaaacttgattttgagtttaata |
3020985 |
T |
|
| Q |
117 |
agtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaaggt |
216 |
Q |
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|| |||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||| || ||||| || |||||||||||| ||||||||||||| |
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| T |
3020984 |
aggttaatgcattttataggaagatggtgaaggaagttgttgatgaagctgaggagttaagtaaacaaatgaactttcttattgcttttagaataaaggt |
3020885 |
T |
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| Q |
217 |
ggataaggttaggcttggaaatcttgatagcaatgaaaactcttcttcaacttccattatgcatcatgtaagtgatgccaaacatggtacgtcat-ttgt |
315 |
Q |
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||||||||| || |||||||| ||||||||||||||| || |||| ||| ||| |||||||||||||| |||||| ||||||||| | ||| |||| |
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| T |
3020884 |
tgataaggttgggtttggaaatgttgatagcaatgaaatttcatctttaacatcctttatgcatcatgtagatgatgctgaacatggtaaggcatattgt |
3020785 |
T |
|
| Q |
316 |
tatgttccttgctttttaatctatgaaaatagcatgcatcttaaaaattctatgcaattcatgatatt |
383 |
Q |
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| T |
3020784 |
tatatt-gtttttttttaatctat---atgagcatgcatcttaacaattctatgcaattcatgatatt |
3020721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 3011024 - 3010738
Alignment:
| Q |
19 |
ttcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaacaag |
118 |
Q |
| |
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|||||||| | |||||||||||| ||||||||| |||| ||||||||||||||||| |||||||| ||||| | |||||||||| |||||||||||||| |
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| T |
3011024 |
ttcaaaagggatgtatcaaaccatgtttttaaagccttctgaagatggagcagaaatagatcttgagtttttcaagaaacttgatattgagtttaacaag |
3010925 |
T |
|
| Q |
119 |
tttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaaggtgg |
218 |
Q |
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|||||| |||||||||||||||| |||||||||||||| | |||||||| |||||||| | ||||| ||||||||||||||| ||||||||||||| | |
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| T |
3010924 |
gttaatgcattttataagaagatggtgaaggaagttgttcatgaagctgatgagttaagtgaacaaatgaattttcttattgcttttagaataaaggttg |
3010825 |
T |
|
| Q |
219 |
ataaggttaggcttggaaatcttgatagcaatgaaaactcttcttcaacttccattatgcatcatgtaagtgatgccaaacatggta |
305 |
Q |
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|||||| | || ||| |||| |||| |||||||||| ||| |||||||| ||| |||||||||||| | |||||| |||||||||| |
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| T |
3010824 |
ataaggctgggtttgaaaattttgacagcaatgaaatctcatcttcaacatcctttatgcatcatgaagatgatgctaaacatggta |
3010738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 20058085 - 20058453
Alignment:
| Q |
16 |
agattcaaaagtgttgtatcaaaccaagtttttaaacccttatgaagatggagcagaaagagatcttgtcttttttaggaaacttgattttgagtttaac |
115 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
20058085 |
agattcaaaagtgttgtatcaaaccatgtttttaaacccttatgaagatggagcagagagagatcttatctttttcaggaaacttgatgttgagtttaac |
20058184 |
T |
|
| Q |
116 |
aagtttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaagg |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20058185 |
aaggttaatggattttataagaagatgatgaaggaagttgttgaggaagctgaggagttaagcaagcaaattaattttcttattgctcttagaataaagg |
20058284 |
T |
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| Q |
216 |
tggataaggttaggcttggaaatcttgatagcaatgaaaactcttcttcaacttccattatgcatcatgtaagtgatgccaaacatggtacgtcatttgt |
315 |
Q |
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|||||||||| | || ||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||| |||| |||| |
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| T |
20058285 |
tggataaggtcgtggttagaaatcttgatagcaatgaaaactcttcttcaacttccattttagatcatgtgaatgatgccaaacatggtaagtcaattgt |
20058384 |
T |
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| Q |
316 |
tatgttccttgctttttaatctatgaaaata----gcatgcatcttaaaaattctatgcaattcatgat |
380 |
Q |
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||||||||||||||| |||||||||||| | ||||||||| ||||||||||| |||||||||||| |
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| T |
20058385 |
tatgttccttgctttctaatctatgaaatgagcatgcatgcatcataaaaattctaagcaattcatgat |
20058453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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