View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5350-Insertion-1 (Length: 1150)

Name: NF5350-Insertion-1
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5350-Insertion-1
NF5350-Insertion-1
[»] chr7 (43 HSPs)
chr7 (402-972)||(21884413-21884997)
chr7 (408-875)||(21911739-21912228)
chr7 (5-126)||(9397757-9397878)
chr7 (481-748)||(10938100-10938369)
chr7 (196-298)||(9398003-9398105)
chr7 (547-681)||(21233023-21233154)
chr7 (85-168)||(9397888-9397971)
chr7 (547-681)||(22338819-22338953)
chr7 (539-660)||(11218691-11218812)
chr7 (547-675)||(9500866-9500993)
chr7 (344-403)||(9398151-9398210)
chr7 (539-681)||(5530629-5530771)
chr7 (554-660)||(18663008-18663114)
chr7 (539-681)||(31493472-31493614)
chr7 (620-744)||(5102076-5102200)
chr7 (539-656)||(5222085-5222202)
chr7 (417-501)||(9917353-9917437)
chr7 (417-501)||(9925265-9925349)
chr7 (543-699)||(9917052-9917207)
chr7 (543-699)||(9924964-9925119)
chr7 (406-514)||(10938443-10938551)
chr7 (402-537)||(9612698-9612833)
chr7 (402-537)||(9840269-9840404)
chr7 (411-468)||(1883134-1883191)
chr7 (556-682)||(140672-140795)
chr7 (546-681)||(13708031-13708167)
chr7 (412-468)||(9863554-9863610)
chr7 (581-657)||(9863766-9863842)
chr7 (410-532)||(13708299-13708419)
chr7 (539-703)||(15612081-15612244)
chr7 (412-468)||(22468203-22468259)
chr7 (602-657)||(2348385-2348440)
chr7 (587-660)||(12329941-12330013)
chr7 (414-467)||(15611838-15611891)
chr7 (631-700)||(18495906-18495974)
chr7 (412-465)||(21502090-21502143)
chr7 (710-750)||(15303136-15303176)
chr7 (404-455)||(24752034-24752083)
chr7 (413-463)||(9501198-9501248)
chr7 (697-777)||(9721427-9721509)
chr7 (414-451)||(141021-141058)
chr7 (799-864)||(10339362-10339427)
chr7 (412-453)||(21233371-21233412)
[»] chr5 (33 HSPs)
chr5 (477-748)||(15544566-15544832)
chr5 (539-748)||(18226607-18226814)
chr5 (581-748)||(32448487-32448654)
chr5 (520-680)||(23265682-23265844)
chr5 (539-681)||(17470674-17470816)
chr5 (520-659)||(26066704-26066845)
chr5 (539-660)||(24164445-24164566)
chr5 (539-703)||(19762673-19762836)
chr5 (520-681)||(26252367-26252529)
chr5 (410-501)||(26252661-26252752)
chr5 (539-700)||(9521327-9521487)
chr5 (539-639)||(26314273-26314373)
chr5 (539-681)||(17170955-17171097)
chr5 (414-501)||(18226854-18226941)
chr5 (579-681)||(25579313-25579415)
chr5 (5-78)||(4217762-4217835)
chr5 (799-899)||(28253619-28253717)
chr5 (412-468)||(19081064-19081120)
chr5 (346-401)||(4217423-4217478)
chr5 (196-274)||(4217549-4217630)
chr5 (799-862)||(18226448-18226511)
chr5 (408-536)||(26308342-26308472)
chr5 (539-657)||(17635863-17635981)
chr5 (539-608)||(18416795-18416864)
chr5 (402-450)||(17830935-17830983)
chr5 (413-468)||(19762423-19762478)
chr5 (402-467)||(28254069-28254134)
chr5 (43-115)||(12356251-12356323)
chr5 (685-729)||(19904051-19904095)
chr5 (411-453)||(17170699-17170741)
chr5 (602-655)||(18938416-18938469)
chr5 (431-468)||(26067004-26067041)
chr5 (539-592)||(26308274-26308327)
[»] chr1 (18 HSPs)
chr1 (402-716)||(7220728-7221047)
chr1 (415-695)||(14240054-14240339)
chr1 (539-681)||(16787149-16787290)
chr1 (539-703)||(17442756-17442919)
chr1 (539-654)||(34481522-34481637)
chr1 (539-681)||(27117136-27117278)
chr1 (412-468)||(17443099-17443155)
chr1 (539-681)||(16113455-16113597)
chr1 (602-660)||(44795950-44796008)
chr1 (546-701)||(15299537-15299689)
chr1 (539-585)||(17837888-17837934)
chr1 (402-455)||(26580855-26580906)
chr1 (587-660)||(15812600-15812673)
chr1 (587-656)||(16360454-16360523)
chr1 (414-468)||(17838129-17838183)
chr1 (402-455)||(33713502-33713553)
chr1 (411-452)||(8697966-8698007)
chr1 (412-453)||(16786898-16786939)
[»] chr4 (22 HSPs)
chr4 (402-748)||(19901097-19901445)
chr4 (554-757)||(1832991-1833193)
chr4 (406-691)||(18448233-18448518)
chr4 (539-678)||(22526827-22526966)
chr4 (602-679)||(12839258-12839335)
chr4 (408-532)||(1832736-1832859)
chr4 (539-618)||(25024040-25024119)
chr4 (586-660)||(25120673-25120747)
chr4 (539-700)||(11520536-11520696)
chr4 (410-501)||(22527116-22527207)
chr4 (632-733)||(10107565-10107667)
chr4 (587-656)||(5956538-5956607)
chr4 (587-660)||(9850886-9850959)
chr4 (539-677)||(9264416-9264553)
chr4 (412-465)||(12838960-12839013)
chr4 (605-660)||(4215027-4215082)
chr4 (556-659)||(5529013-5529116)
chr4 (602-657)||(17672570-17672625)
chr4 (406-501)||(23975016-23975111)
chr4 (546-680)||(26115316-26115450)
chr4 (697-777)||(13587694-13587776)
chr4 (457-535)||(23972094-23972172)
[»] chr6 (24 HSPs)
chr6 (539-681)||(2587259-2587401)
chr6 (542-748)||(23087705-23087911)
chr6 (402-536)||(32759194-32759327)
chr6 (539-681)||(24216086-24216228)
chr6 (539-748)||(10504105-10504315)
chr6 (539-675)||(14725971-14726107)
chr6 (410-501)||(3357351-3357442)
chr6 (620-741)||(24180761-24180884)
chr6 (675-777)||(28585530-28585633)
chr6 (402-460)||(10504410-10504468)
chr6 (636-775)||(9897685-9897826)
chr6 (799-923)||(24187899-24188020)
chr6 (800-898)||(23088010-23088105)
chr6 (539-660)||(9291479-9291600)
chr6 (794-875)||(28585696-28585777)
chr6 (416-471)||(14726297-14726352)
chr6 (413-471)||(14726369-14726427)
chr6 (596-660)||(22849953-22850017)
chr6 (602-657)||(4340324-4340379)
chr6 (603-698)||(22565629-22565723)
chr6 (414-465)||(23644952-23645003)
chr6 (606-703)||(9726539-9726635)
chr6 (799-899)||(28589145-28589243)
chr6 (547-588)||(32759130-32759171)
[»] chr2 (26 HSPs)
chr2 (554-660)||(25348575-25348681)
chr2 (539-703)||(26291603-26291766)
chr2 (539-681)||(45621321-45621463)
chr2 (539-703)||(25939665-25939828)
chr2 (548-748)||(8502545-8502753)
chr2 (520-645)||(9239775-9239902)
chr2 (432-684)||(41789895-41790140)
chr2 (539-681)||(45553683-45553825)
chr2 (539-660)||(16075842-16075963)
chr2 (414-501)||(8502302-8502389)
chr2 (546-660)||(21072178-21072292)
chr2 (412-468)||(27420245-27420301)
chr2 (442-535)||(9243432-9243525)
chr2 (412-501)||(25348845-25348934)
chr2 (412-468)||(27419099-27419155)
chr2 (799-870)||(9239498-9239569)
chr2 (554-593)||(26652705-26652744)
chr2 (602-660)||(19199628-19199686)
chr2 (603-701)||(27418756-27418853)
chr2 (603-701)||(27419902-27419999)
chr2 (794-863)||(8502833-8502902)
chr2 (403-454)||(34368593-34368642)
chr2 (692-747)||(9239668-9239723)
chr2 (587-656)||(13777008-13777077)
chr2 (412-453)||(16075587-16075628)
chr2 (602-651)||(22568190-22568239)
[»] chr8 (18 HSPs)
chr8 (539-681)||(17977161-17977303)
chr8 (539-682)||(5052330-5052473)
chr8 (410-537)||(24519810-24519939)
chr8 (546-681)||(24905182-24905317)
chr8 (413-537)||(14076244-14076370)
chr8 (539-681)||(5855645-5855787)
chr8 (581-703)||(17965540-17965661)
chr8 (603-774)||(24119189-24119361)
chr8 (422-467)||(15061472-15061517)
chr8 (402-535)||(24080280-24080413)
chr8 (822-905)||(24119454-24119535)
chr8 (587-666)||(24645412-24645491)
chr8 (413-468)||(24905407-24905462)
chr8 (602-660)||(6885539-6885597)
chr8 (603-681)||(15064830-15064908)
chr8 (548-597)||(24381227-24381276)
chr8 (673-757)||(17972688-17972772)
chr8 (406-451)||(24115046-24115091)
[»] scaffold0672 (1 HSPs)
scaffold0672 (539-678)||(4428-4567)
[»] chr3 (17 HSPs)
chr3 (539-681)||(820923-821065)
chr3 (539-652)||(22245880-22245993)
chr3 (539-645)||(13907671-13907777)
chr3 (539-703)||(6290350-6290513)
chr3 (546-681)||(27853945-27854079)
chr3 (588-660)||(3115865-3115937)
chr3 (588-660)||(5508915-5508987)
chr3 (555-703)||(21018384-21018525)
chr3 (587-657)||(20430336-20430406)
chr3 (477-585)||(20885818-20885927)
chr3 (411-467)||(27853699-27853756)
chr3 (555-595)||(21019326-21019366)
chr3 (539-614)||(314682-314757)
chr3 (807-861)||(23055849-23055903)
chr3 (435-468)||(13907457-13907490)
chr3 (413-446)||(21019168-21019201)
chr3 (402-455)||(23055396-23055449)
[»] scaffold0128 (1 HSPs)
scaffold0128 (587-703)||(44-159)
[»] scaffold0019 (2 HSPs)
scaffold0019 (539-660)||(183888-184009)
scaffold0019 (414-501)||(27337-27423)
[»] scaffold0032 (1 HSPs)
scaffold0032 (782-899)||(71273-71388)
[»] scaffold0622 (1 HSPs)
scaffold0622 (604-657)||(1118-1171)
[»] scaffold0394 (1 HSPs)
scaffold0394 (418-455)||(10903-10940)


Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 402 - 972
Target Start/End: Original strand, 21884413 - 21884997
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21884413 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacatgaccctgatatataggaatttagggaggtgacatacctaata 21884512  T
Q  502 ctagtgtatacatgtcttaatcaggaagtaactaatctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaact 601  Q
     | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  21884513 ttggtgtatacatgtcttactcaggaagtaactaatctaattagggaaacaagtgacttcacgacttaattcagcccagtaacttcattctcctcgaact 21884612  T
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21884613 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 21884712  T
Q  702 gatactttgaatttaggacccctattatccatcattgtttcaaatacttacgag-aagtaagaccctacatgtaaacactg-----------------aa 783  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||                 ||    
T  21884713 gatactttgaatttaggacctctattatccatcattgtttcaaatacttatgagaaagtaagaacctacatgtaagcactgaaagccctaaacactgaaa 21884812  T
Q  784 cccgtagcacctccagtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtgg 883  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |    
T  21884813 cccgtagcacctccagtgtaatggttgcaactaacaactggaggggaatgaactaatatctctgagagagtaagaccccacgcgtacatacctgtg--tg 21884910  T
Q  884 atcagcaggtgcaactagacaggctgatagccagtaaaacaccggtaacctccgtcacttgaatagaaaacttt-aaagttgaataagac 972  Q
    ||||||||||||||||||||| |||||||| ||||||||| || |||| || |||||||||||||| ||||||| |||||||||||||||    
T  21884911 atcagcaggtgcaactagaca-gctgataggcagtaaaac-cccgtaaact-cgtcacttgaataggaaactttaaaagttgaataagac 21884997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 408 - 875
Target Start/End: Original strand, 21911739 - 21912228
Alignment:
Q  408 gaatgctatttaattttactat--cgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactag 505  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| |    
T  21911739 gaatgctatttaagtttactatatcgtgcgtaagatttgtctcctctgaagcataaccttgatatataggaacttaggg-ggtgacatacctaatactgg 21911837  T
Q  506 tgtatacatgtcttaatcaggaagtaactaatctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttgg 605  Q
    ||||||  ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| | |||| ||||    
T  21911838 tgtatatctgtcttaattaggaagtatctaatctaattagggaaacaagtgactttacgacttaaatcatcccagtaacttcattctcgttgaaccttgg 21911937  T
Q  606 taaggtagacgcttatagggttacacgtttgtagaact----actgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 701  Q
    | |||||||||||  ||||| | | |||||||| ||||    |  ||||| ||||||||  |||||||||||||||||||||| | ||| ||||||||||    
T  21911938 ttaggtagacgctgttagggctgcccgtttgtaaaactcccgagagagagagagagtgtgctatgttcttctaagattcaatatgcgagagaacctttag 21912037  T
Q  702 gatactttgaatttaggacccctattatccatcattgtttcaaatacttacgag-aagtaagaccctacatgtaaacactg-----------------aa 783  Q
    ||| | |||||||||||| ||||||||| | ||||||||| |||||| || ||| |||||||| |||||||||||||||||                 ||    
T  21912038 gatgcattgaatttaggatccctattattcgtcattgttt-aaatacctatgagaaagtaagagcctacatgtaaacactgacaatcctaaacactgaaa 21912136  T
Q  784 cccgtagcacctccagtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacc 875  Q
    | ||||  | |||| ||||||||||||||||| |||  |||||||||||||||  ||| |||||||| ||||||||||||| ||||||||||    
T  21912137 ctcgtatgaactccggtgtaatggttgcaactgacagatggaggggaatgaacccatatctctgagaaagtaagaccccacacgtacatacc 21912228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 9397757 - 9397878
Alignment:
Q  5 acaaatcctaatcttcaaaattaaactcacatcacagacacatgaatatagaatcagagcatagattttagatcggaacagtagatcgtcagatcttctt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  9397757 acaaatcctaatcttcaaaattaaactcacatcacagacacatgaatatagaatcagagcatagattttagatcggaacagtagatcgtgagatcttctc 9397856  T
Q  105 gtcggtgggggagaacgcggaa 126  Q
    ||||||||||||||||| ||||    
T  9397857 gtcggtgggggagaacgtggaa 9397878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 481 - 748
Target Start/End: Complemental strand, 10938369 - 10938100
Alignment:
Q  481 agggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagtaactaatc--taattagggaaacaagtgacttcacgacttaaatcaacct 578  Q
    ||||||||||||||||||||| | ||  |||| ||    |||||||||||||||| |   |||||| ||||||||||||||||| || ||| |||| |      
T  10938369 agggaggtgacatacctaatattggtccatacctgcgagaatcaggaagtaactagttagtaattaaggaaacaagtgacttcatgatttatatcatcac 10938270  T
Q  579 agtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagat 678  Q
    | |||  ||||| | |||  || ||||||||||||||| |||||||||||| ||||||||||||| | || |||||||||||  ||||| ||||||||||    
T  10938269 aataatatcatttttctcacaccttggtaaggtagacgattatagggttacccgtttgtagaactccagaaagggagagtgtgttatgtacttctaagat 10938170  T
Q  679 tcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatac 748  Q
    |||||||| |||||||| ||||||||||||||||||||| | |||| |||||| ||||||||||||||||    
T  10938169 tcaataggcgagggaacatttaggatactttgaatttagcaaccctgttatccgtcattgtttcaaatac 10938100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 9398003 - 9398105
Alignment:
Q  196 cgcgtctccggtgtccggcggtttaagtcggtcctgtctgagaggtatggcagtgaggagagggagtatgatgggagagtgatggtcttgcacgggaaag 295  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9398003 cgcgtctccgatgtccggcggtttaagtcggtcctgtctgaaaggtatggcagtgaggagagggagcatgatgggagagtgatggtcttgcacgggaaag 9398102  T
Q  296 aag 298  Q
    |||    
T  9398103 aag 9398105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 547 - 681
Target Start/End: Complemental strand, 21233154 - 21233023
Alignment:
Q  547 gaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactact 646  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||| |||||| | | | |||||| |||||      
T  21233154 gaaacaagtgacttcacgacttaaatcaacccagtaattccattctcctcgtactttggtaaggtagacgctgatagggctgctcatttgtaaaacta-- 21233057  T
Q  647 gagagggagagtgtcatatgttcttctaagattca 681  Q
     | ||||||||||| |||||| |||||||||||||    
T  21233056 -aaagggagagtgtgatatgtacttctaagattca 21233023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 9397888 - 9397971
Alignment:
Q  85 gtagatcgtcagatcttcttgtcggtgggggagaacgcggaacggcaccgttcgtgggcgagagaactgtgtgagggagggagg 168  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  9397888 gtagatcgtgagatcttctcgtcggtcggggagaacgcggaacgacgccgttcgtcggcgagagaactgtgtgagggagggagg 9397971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 547 - 681
Target Start/End: Original strand, 22338819 - 22338953
Alignment:
Q  547 gaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactact 646  Q
    |||||||||||||||| || ||| |||| |||||||||| ||||||||||| || ||||||||||| ||||| |||||| |||  ||||||||||||||     
T  22338819 gaaacaagtgacttcatgatttatatcatcctagtaactccattctcctcgcaccttggtaaggtatacgctaatagggctacctgtttgtagaactacc 22338918  T
Q  647 gagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||| |||||||  ||||| ||  |||||||||    
T  22338919 gagaggaagagtgtgctatgtactcataagattca 22338953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 11218691 - 11218812
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||| ||||||| ||||||||||| || ||| ||| ||||||||||| || ||||||||||| ||||| |||||| | | ||||||||    
T  11218691 taattaaggaaacaagcgacttcatgacttaaatcagcccagttactccattctcctcgcaccttggtaaggtatacgctgatagggcttcccgtttgta 11218790  T
Q  639 gaactactgagagggagagtgt 660  Q
    |||||||||| | |||||||||    
T  11218791 gaactactgataaggagagtgt 11218812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 547 - 675
Target Start/End: Complemental strand, 9500993 - 9500866
Alignment:
Q  547 gaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactact 646  Q
    ||||||||||||||||||||||||| || || | ||||| ||||||||||| || ||||||||||||||| | |||||||  | |||||||||||||||     
T  9500993 gaaacaagtgacttcacgacttaaaccatcccaataactccattctcctcgcaccttggtaaggtagacgttgatagggtggc-cgtttgtagaactacc 9500895  T
Q  647 gagagggagagtgtcatatgttcttctaa 675  Q
    |||||||||||| |  ||||| |||||||    
T  9500894 gagagggagagtttgttatgtacttctaa 9500866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 9398151 - 9398210
Alignment:
Q  344 gaaatacaatacggtgtcgtatatgtgttgtggtttttgtgtcccattatcaatgctctt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9398151 gaaatacaatacggtgtcgtatatgtgttgtggtttttgtgtcccgttatcaatgctctt 9398210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 5530771 - 5530629
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||| ||||||||||||||||| || | ||||| |||||||| || || ||||||||||||| ||  |||||| | | | ||||||    
T  5530771 taattaaggaaacaagtggcttcacgacttaaatcagcccaataactccattctccacgcaccttggtaaggtagatgccgataggggtgcccatttgta 5530672  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||| ||||||||||||||  ||||| | | |||||||||    
T  5530671 gaactaccgagagggagagtgtgttatgtacatataagattca 5530629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 554 - 660
Target Start/End: Complemental strand, 18663114 - 18663008
Alignment:
Q  554 gtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagaggg 653  Q
    ||||||||| |||||||||||||| || | ||||||| ||||| ||| ||||||||||||||||| ||||||||   ||||||||||||||| || ||||    
T  18663114 gtgacttcatgacttaaatcaacccagcatcttcattatcctcaaaccttggtaaggtagacgctgatagggttgtccgtttgtagaactaccgaaaggg 18663015  T
Q  654 agagtgt 660  Q
    |||||||    
T  18663014 agagtgt 18663008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 31493614 - 31493472
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||||| |||| ||||||||||  |  || |||| |||||||||| ||| ||||||||||||||| | |||||| | |  |||||||    
T  31493614 taattaaggaaacaagtgatttcaagacttaaatcggctcagcaactccattctcctcaaaccttggtaaggtagacgttgatagggctgcctgtttgta 31493515  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||||| |||||||||||||  ||||| || ||||||||||    
T  31493514 gaactactaagagggagagtgtgttatgtactcctaagattca 31493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 620 - 744
Target Start/End: Original strand, 5102076 - 5102200
Alignment:
Q  620 atagggttacacgtttgtagaactactgagagggagagtgt-catatgttcttctaagattcaataggtgagggaacctttaggatactttgaatttagg 718  Q
    |||||||| | |||||||||||||||||||||||||||||| |  |||| ||||||||||| |||| | |||||||||||||||||||  | ||||||||    
T  5102076 atagggttgctcgtttgtagaactactgagagggagagtgtgctgatgtccttctaagatttaata-gcgagggaacctttaggatacccttaatttagg 5102174  T
Q  719 acccctattatccatcattgtttcaa 744  Q
    | || |||||| | ||||||||||||    
T  5102175 aaccttattattcgtcattgtttcaa 5102200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 539 - 656
Target Start/End: Original strand, 5222085 - 5222202
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| | ||||||||| || ||||||||||||||||||| || |||||||| |||| | |  ||||  |||  |||||||    
T  5222085 taattaaggaaacaagtgacttcatgtcttaaatcagccaagtaacttcattctcctcgcaccttggtaagatagatgttggtaggtctacctgtttgta 5222184  T
Q  639 gaactactgagagggaga 656  Q
    ||||||||||||||||||    
T  5222185 gaactactgagagggaga 5222202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 9917437 - 9917353
Alignment:
Q  417 ttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||||||||| |||||||||||||||||||  || ||| ||||||||||||| ||||| | |||||||||||||||||||||||    
T  9917437 ttaattttactgtcgtgcgtaagatttgtcttgtcagaatcataaccctgatacataggcacttagggaggtgacatacctaata 9917353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 9925349 - 9925265
Alignment:
Q  417 ttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||||||||| |||||||||||||||||||  || ||| ||||||||||||| ||||| | |||||||||||||||||||||||    
T  9925349 ttaattttactgtcgtgcgtaagatttgtcttgtcagaatcataaccctgatacataggcacttagggaggtgacatacctaata 9925265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 543 - 699
Target Start/End: Complemental strand, 9917207 - 9917052
Alignment:
Q  543 tagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaac 642  Q
    |||||||||| |||||||||| ||||||||||||    ||||||| || ||||||||  || |||||||||| ||| |||||| | | | |||||||||     
T  9917207 tagggaaacatgtgacttcacaacttaaatcaactcgataacttcgttgtcctcgaagcttagtaaggtagatgctgatagggctgcccatttgtagaaa 9917108  T
Q  643 tactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaaccttt 699  Q
    ||| ||||||||||||||  ||| | ||||||| |||| |||| |||||||||||||    
T  9917107 taccgagagggagagtgtgctatttacttctaaaattc-atagatgagggaaccttt 9917052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 543 - 699
Target Start/End: Complemental strand, 9925119 - 9924964
Alignment:
Q  543 tagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaac 642  Q
    |||||||||| |||||||||| ||||||||||||    ||||||| || ||||||||  || |||||||||| ||| |||||| | | | |||||||||     
T  9925119 tagggaaacatgtgacttcacaacttaaatcaactcgataacttcgttgtcctcgaagcttagtaaggtagatgctgatagggctgcccatttgtagaaa 9925020  T
Q  643 tactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaaccttt 699  Q
    ||| ||||||||||||||  ||| | ||||||| |||| |||| |||||||||||||    
T  9925019 taccgagagggagagtgtgctatttacttctaaaattc-atagatgagggaaccttt 9924964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 406 - 514
Target Start/End: Complemental strand, 10938551 - 10938443
Alignment:
Q  406 tcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactag 505  Q
    ||||||| |||||||||||||| | ||| ||||||||||||||||||  | |||||||||||||  |||| | ||||| ||||||||||||||||| | |    
T  10938551 tcgaatgttatttaattttactgtggtgtgtaagatttgtctcctctagagcataaccctgataactaggcacttaggaaggtgacatacctaatattgg 10938452  T
Q  506 tgtatacat 514  Q
    | |||||||    
T  10938451 tttatacat 10938443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 402 - 537
Target Start/End: Original strand, 9612698 - 9612833
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaac--ataaccctgatatataggaatttagggaggtgacatacctaa 499  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||| |  |  ||||||| ||| | | | ||||| |||||||| ||||||    
T  9612698 tttttcgaatcctatttaattttactat--tgcgtaagatttgtctcctctgaagcgaaccaccctgagatacatgtacttaggaaggtgacaaacctaa 9612795  T
Q  500 tactagtgtatacatgtcttaatcaggaagtaactaat 537  Q
    || | ||| | || |  |||||||||||||||||||||    
T  9612796 tattggtgcaaacctaccttaatcaggaagtaactaat 9612833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 402 - 537
Target Start/End: Original strand, 9840269 - 9840404
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaac--ataaccctgatatataggaatttagggaggtgacatacctaa 499  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||| |  |  ||||||| ||| | | | ||||| |||||||| ||||||    
T  9840269 tttttcgaatcctatttaattttactat--tgcgtaagatttgtctcctctgaagcgaaccaccctgagatacatgtacttaggaaggtgacaaacctaa 9840366  T
Q  500 tactagtgtatacatgtcttaatcaggaagtaactaat 537  Q
    || | ||| | || |  |||||||||||||||||||||    
T  9840367 tattggtgcaaacctaccttaatcaggaagtaactaat 9840404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 411 - 468
Target Start/End: Complemental strand, 1883191 - 1883134
Alignment:
Q  411 tgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  1883191 tgctatttagttttattgtcgtgcgtaagatttgtctcctctgaagcataaccctgat 1883134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 556 - 682
Target Start/End: Complemental strand, 140795 - 140672
Alignment:
Q  556 gacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggag 655  Q
    |||||||||||||||||||||| ||||||| ||||||| ||   | ||||||||||||||| | ||||||||   | |||||| ||||||| |||  |||    
T  140795 gacttcacgacttaaatcaacccagtaactccattctcttc---cattggtaaggtagacgttgatagggttctccctttgtacaactactaagatagag 140699  T
Q  656 agtgtcatatgttcttctaagattcaa 682  Q
    ||| |  ||||| ||||||||||||||    
T  140698 agtatgttatgtacttctaagattcaa 140672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 546 - 681
Target Start/End: Complemental strand, 13708167 - 13708031
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacac-gtttgtagaacta 644  Q
    ||||| ||||||||||||||||||||| | |  ||||||| || |||  |   || |||||||||||||| || |||||||||| | ||||||| |||||    
T  13708167 ggaaataagtgacttcacgacttaaataagctcagtaactccactcttgtttcaccttggtaaggtagacactgatagggttaccccgtttgtataacta 13708068  T
Q  645 ctgagagggagagtgtcatatgttcttctaagattca 681  Q
    |  |||||||||||||  ||||| |||||||||||||    
T  13708067 ccaagagggagagtgtgctatgtgcttctaagattca 13708031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 9863554 - 9863610
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||||| ||||||| | |||||||||||||||||||||| || ||||||||||||    
T  9863554 gctatttagttttactgtagtgcgtaagatttgtctcctcttaagcataaccctgat 9863610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 581 - 657
Target Start/End: Original strand, 9863766 - 9863842
Alignment:
Q  581 taacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    ||||| ||||||||||| || || |||||||||||||| |||||| | | | ||||||||||||||||||| |||||    
T  9863766 taactccattctcctcgcaccttagtaaggtagacgctgatagggctccccatttgtagaactactgagagagagag 9863842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 410 - 532
Target Start/End: Complemental strand, 13708419 - 13708299
Alignment:
Q  410 atgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgaca-tacctaatactagtgt 508  Q
    |||||||||| ||||| | |||||||||||||||||||||||| || ||||||||  | |  |||| | |||||||||||||| ||||||||| |  |||    
T  13708419 atgctatttatttttattttcgtgcgtaagatttgtctcctctaaagcataaccc--agacttaggcacttagggaggtgacattacctaatattgatgt 13708322  T
Q  509 atacatgtcttaatcaggaagtaa 532  Q
    ||| |||| ||||||| |||||||    
T  13708321 atatatgt-ttaatcaagaagtaa 13708299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 539 - 703
Target Start/End: Original strand, 15612081 - 15612244
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||| ||||||| || ||||||||||||   |||||| |||| | ||   || ||||||| ||||||||| |||||| ||| ||||||||    
T  15612081 taattaaggaaacatgtgactttacaacttaaatcaactcggtaactccatttttctttcaccttggtaaagtagacgctgatagggctacccgtttgta 15612180  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||  |||| ||| ||| |  |||||  | ||||||||| ||||  ||||||||||||||||    
T  15612181 gaactatcgagaaggatagtatgctatgtattgctaagattc-atagaggagggaacctttagga 15612244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 22468259 - 22468203
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||||| ||||||||| |||||||||||||||||||||||||  ||||| |||||    
T  22468259 gctatttagttttactatagtgcgtaagatttgtctcctctgaagtataactctgat 22468203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 602 - 657
Target Start/End: Original strand, 2348385 - 2348440
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    ||||||||||||||||| |||||||| | |||||||||||||||| |||| |||||    
T  2348385 ttggtaaggtagacgctgatagggttgcccgtttgtagaactactaagagtgagag 2348440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 587 - 660
Target Start/End: Complemental strand, 12330013 - 12329941
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    |||||||||||||||||| ||||||||||||| |||||| | | |  |||||||||||  ||||||||||||||    
T  12330013 cattctcctcgaactttg-taaggtagacgctgatagggctgcccagttgtagaactatcgagagggagagtgt 12329941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 15611838 - 15611891
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctga 467  Q
    |||||| | ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  15611838 tatttagtcttactatagtgcgtaagatttgtctcccctgaagcataaccctga 15611891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 631 - 700
Target Start/End: Complemental strand, 18495974 - 18495906
Alignment:
Q  631 cgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaaccttta 700  Q
    |||||| ||||||||| ||||||||| |||| |||||  ||||||||||| |||| ||||||||||||||    
T  18495974 cgtttgcagaactactaagagggagaatgtcttatgtatttctaagattc-atagatgagggaaccttta 18495906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Complemental strand, 21502143 - 21502090
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccct 465  Q
    |||||||| ||||||||| ||||||||||||||||||||||  |||| ||||||    
T  21502143 gctatttagttttactatagtgcgtaagatttgtctcctctagaacacaaccct 21502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 710 - 750
Target Start/End: Original strand, 15303136 - 15303176
Alignment:
Q  710 gaatttaggacccctattatccatcattgtttcaaatactt 750  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  15303136 gaatttaggaaccctaatatccatcattgtttcaaatactt 15303176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 24752034 - 24752083
Alignment:
Q  404 tttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaa 455  Q
    |||||||| ||||||||||||||||  || ||||||||||||||||||||||    
T  24752034 tttcgaatcctatttaattttacta--gtacgtaagatttgtctcctctgaa 24752083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 413 - 463
Target Start/End: Complemental strand, 9501248 - 9501198
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataacc 463  Q
    ||||||| ||||||| | || |||||||||||||||||||||| |||||||    
T  9501248 ctatttagttttactgtagtacgtaagatttgtctcctctgaagcataacc 9501198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 777
Target Start/End: Complemental strand, 9721509 - 9721427
Alignment:
Q  697 tttaggatactttgaatttaggacccctattatccatcattgtttcaaatactta-cga-gaagtaagaccctacatgtaaac 777  Q
    |||| |||||||||||||||||| ||||||||||| || |||| |||||| | || |||  |||||||| |||||||||||||    
T  9721509 tttatgatactttgaatttaggaaccctattatccgtctttgtctcaaattcctatcgataaagtaagaacctacatgtaaac 9721427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 141058 - 141021
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctc 451  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  141058 tatttagttttactgtcgtgcgtaagatttgtctcctc 141021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 864
Target Start/End: Original strand, 10339362 - 10339427
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccac 864  Q
    ||||||||||||| | ||||| || ||||| |||||||| ||  |||||||||| |||||||||||    
T  10339362 gtgtaatggttgccagtaacatctagagggcaatgaactcatgcctctgagagattaagaccccac 10339427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 21233412 - 21233371
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctg 453  Q
    |||||||  ||||||||| |||||||||||||||||||||||    
T  21233412 gctattttgttttactatagtgcgtaagatttgtctcctctg 21233371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 5e-62; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 477 - 748
Target Start/End: Complemental strand, 15544832 - 15544566
Alignment:
Q  477 atttagggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagtaactaatctaattagggaaacaagtgacttcacgacttaaatcaac 576  Q
    ||||||| |||||||||| |||||| | ||| | || |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  15544832 atttaggaaggtgacatatctaatattggtgcaaacctacctaaatcaggaagtaactaatctaattagggaaacaagtgacttcacgacttaaatcagt 15544733  T
Q  577 ctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaag 676  Q
    | |||||||||||||||||  ||| |||||||| ||||| || |||||  | | |||||||   ||||| ||||||||||||||  |||| || ||||||    
T  15544732 caagtaacttcattctcctaaaaccttggtaagatagacactgataggactgcccgtttgt---actaccgagagggagagtgtgctatg-tcctctaag 15544637  T
Q  677 attcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatac 748  Q
    |||||||||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  15544636 attcaataggcg-gggaacctttaggatactttgaatttaggaaccctattatccgtcattgtttcaaatac 15544566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 539 - 748
Target Start/End: Complemental strand, 18226814 - 18226607
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    ||||||||||| ||||||||||||| ||||||||||  |||| |||||||||||||  |||| ||||||||||||| | | |||||| | | |||||| |    
T  18226814 taattagggaagcaagtgacttcacaacttaaatcagtctagaaacttcattctccgagaaccttggtaaggtagatg-tgatagggatgctcgtttgaa 18226716  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattg 738  Q
    ||||||| | ||||||||||||  || ||| || |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |  |||||    
T  18226715 gaactaccgggagggagagtgtgctaggtt-ttataagattcaataggtgagggaaccttcaggataccttgaatttaggaaccctattattcgccattg 18226617  T
Q  739 tttcaaatac 748  Q
    ||||||||||    
T  18226616 tttcaaatac 18226607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 581 - 748
Target Start/End: Complemental strand, 32448654 - 32448487
Alignment:
Q  581 taacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattc 680  Q
    ||||||||||||| ||| || ||||||||||||| ||| |||||||||| |||||||| |||||  |||| ||| | |||  |||||  ||||||| |||    
T  32448654 taacttcattctcttcgcaccttggtaaggtagatgctgatagggttactcgtttgtaaaactatcgagatggataatgtgttatgtgtttctaagtttc 32448555  T
Q  681 aataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatac 748  Q
    ||||||||||||||||| | |||||||||||||||| || ||||||||| | ||||||||||||||||    
T  32448554 aataggtgagggaacctgtgggatactttgaatttatgaaccctattattcgtcattgtttcaaatac 32448487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 520 - 680
Target Start/End: Complemental strand, 23265844 - 23265682
Alignment:
Q  520 aatcaggaagtaactaat--ctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgc 617  Q
    |||||||||||| ||| |  ||||||| ||||||| ||||||||||||||||||||| || | |||||||||||||||   || ||||||||||||| |     
T  23265844 aatcaggaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 23265745  T
Q  618 ttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattc 680  Q
    | |||||||| | ||||||||||||||| |||| |||||||||  ||||| ||||||||||||    
T  23265744 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattc 23265682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 17470674 - 17470816
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| | ||||||| |  | | ||||||||||||||||| || |||||||||||||| || |||||| | | ||||||||    
T  17470674 taattaaggaaacaagtgacttcatgtcttaaattagtccaataacttcattctcctcgcaccttggtaaggtagacactgatagggattcccgtttgta 17470773  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||||||||||||||||| |  ||||| || ||||||||||    
T  17470774 gaactactgagagggagagtttgttatgtactcctaagattca 17470816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 520 - 659
Target Start/End: Complemental strand, 26066845 - 26066704
Alignment:
Q  520 aatcaggaagtaactaatc--taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgc 617  Q
    ||||||| ||||||||||   || ||| |||||||||| ||||||||||||||||||   |||||||| ||||||||||| || |||||||| |||||||    
T  26066845 aatcaggtagtaactaattagtacttaaggaaacaagttacttcacgacttaaatcagtgtagtaactccattctcctcgcaccttggtaagttagacgc 26066746  T
Q  618 ttatagggttacacgtttgtagaactactgagagggagagtg 659  Q
    | |||||| | | ||||||||||||||| |||||||||||||    
T  26066745 tgatagggctgcccgtttgtagaactaccgagagggagagtg 26066704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 24164445 - 24164566
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| || ||||| | ||||||| |||||| ||||||||||||||||| |||||| | | | ||||||    
T  24164445 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaattccattctcttcgaaccttggtaaggtagacgctgatagggctgcccatttgta 24164544  T
Q  639 gaactactgagagggagagtgt 660  Q
    ||| |||| |||||||||||||    
T  24164545 gaagtactaagagggagagtgt 24164566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 539 - 703
Target Start/End: Original strand, 19762673 - 19762836
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||||| ||||||||| || | ||||| |||||| || | || ||||||||||||||||| |||||| |   |||||| |    
T  19762673 taattaaggaaacaagtgacttcacgtcttaaatcagcccaataactccattcttcttgcaccttggtaaggtagacgctgatagggctgtccgtttgga 19762772  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||| ||||||||||||||   |||| |||||||||||| |||  ||| |||||||||||||    
T  19762773 gaactaccgagagggagagtgtgcaatgtacttctaagattc-ataaatgaaggaacctttagga 19762836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 520 - 681
Target Start/End: Complemental strand, 26252529 - 26252367
Alignment:
Q  520 aatcaggaagtaactaatc--taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgc 617  Q
    |||||||||||||||| |   || |||| |||| | |||||||||||||| ||||||||  ||||||||||||||||| ||| || ||||||||||| ||    
T  26252529 aatcaggaagtaactagttagtagttagagaaagatgtgacttcacgactgaaatcaacacagtaacttcattctcctagaaatt-ggtaaggtagatgc 26252431  T
Q  618 ttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    | |||||| | | |||||| |||||||| ||||||||||||||  ||||| |||||||||||||    
T  26252430 tgatagggctgcccgtttgcagaactaccgagagggagagtgtgctatgtacttctaagattca 26252367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 26252752 - 26252661
Alignment:
Q  410 atgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||| |||||||||||||  |||| | | |||||||||||||| ||||||    
T  26252752 atgctatttaactttaccgtcgtgcgtaagatttgtctcctctgaagcataaccctgatacctaggcactaagggaggtgacatatctaata 26252661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 539 - 700
Target Start/End: Complemental strand, 9521487 - 9521327
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||| |||||| |||||||||||||   || ||||| |||||||||   || || |||| ||||||| | ||||||||   ||||||||    
T  9521487 taattaaggaaacaattgactttacgacttaaatcagtataataactccattctcctttcaccttcgtaaagtagacgatgatagggttgtccgtttgta 9521388  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaaccttta 700  Q
    ||||||| ||||||||||||||  ||||| ||||||||| | ||||| ||||| ||||||||    
T  9521387 gaactaccgagagggagagtgtgctatgtacttctaagact-aatagttgaggaaaccttta 9521327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 539 - 639
Target Start/End: Complemental strand, 26314373 - 26314273
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||||||||||| ||||||||||  |||| |||| ||||||||||| || || |||||||||||||| |||||| | | ||||||||    
T  26314373 taattaaggaaacaagtgacttcacaacttaaatcagtctagcaactccattctcctcgcaccttagtaaggtagacgctgatagggctgcccgtttgta 26314274  T
Q  639 g 639  Q
    |    
T  26314273 g 26314273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 17170955 - 17171097
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||| | | ||||||| |||||||||||  | ||||| | |||||||||| ||| ||||||||||||||||| |||||| | |  |||||||    
T  17170955 taattaaggaaataggcgacttcatgacttaaatcaggccagtaattccattctcctcaaaccttggtaaggtagacgctgatagggctgcctgtttgta 17171054  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||   |||||||||||||  ||||| || ||||||||||    
T  17171055 gaactatcaagagggagagtgtgttatgtactgctaagattca 17171097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 414 - 501
Target Start/End: Complemental strand, 18226941 - 18226854
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||||||||||| || || ||||||||||||| ||||||| |||||||  |||| ||||| | ||||||| |||||||||||||||    
T  18226941 tatttaattttactgtcatgtgtaagatttgtctgctctgaagcataacctagatacataggcacttagggaagtgacatacctaata 18226854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 579 - 681
Target Start/End: Original strand, 25579313 - 25579415
Alignment:
Q  579 agtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagat 678  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||| | | | ||| ||||| ||| |||||||||||| |  ||||| ||||||||||    
T  25579313 agtaacttcattctcctctcaccttggtaaggtagacgctgataggggtgctcatttatagaaataccgagagggagagtatgctatgtacttctaagat 25579412  T
Q  679 tca 681  Q
    |||    
T  25579413 tca 25579415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 4217835 - 4217762
Alignment:
Q  5 acaaatcctaatcttcaaaattaaactcacatcacagacacatgaatatagaatcagagcatagattttagatc 78  Q
    |||||||| ||| || ||| ||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  4217835 acaaatccaaatttttaaatttaaattcacatcacagacacatgaatatagaatcagagctgagattgtagatc 4217762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 799 - 899
Target Start/End: Complemental strand, 28253717 - 28253619
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtggatcagcaggtgcaac 898  Q
    |||||||||||| |||| ||| |||||||| |||||||  ||| || |||||||||||||||||||  ||||||||| |||   ||||||||||||||||    
T  28253717 gtgtaatggttgaaacttacatctggagggaaatgaacctatacctttgagagagtaagaccccacatgtacatacccgtg--tgatcagcaggtgcaac 28253620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 19081064 - 19081120
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||| | |||||||||||||||||||||||||||||| | |||||||||||||||    
T  19081064 gctattaagttttactatcgtgcgtaagatttgtctcctttaaaacataaccctgat 19081120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 4217478 - 4217423
Alignment:
Q  346 aatacaatacggtgtcgtatatgtgttgtggtttttgtgtcccattatcaatgctc 401  Q
    |||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||    
T  4217478 aatacaatacggtgtcgtatttgtgttatggtttttgtgtccatttatcaatgctc 4217423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 4217630 - 4217549
Alignment:
Q  196 cgcgtctccggtgtccggcggtttaagtcggtcctgtctgagaggtatggcagtga---ggagagggagtatgatgggagag 274  Q
    |||||||||| ||  |||||||||||||| ||||| || |||||||||||||||||    ||||||||||||||||||||||    
T  4217630 cgcgtctccgatgggcggcggtttaagtcagtcctatcagagaggtatggcagtgacagagagagggagtatgatgggagag 4217549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 799 - 862
Target Start/End: Complemental strand, 18226511 - 18226448
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagacccc 862  Q
    |||| |||||||||||| |||||||||||||||||||   ||| ||||||||||||||||||||    
T  18226511 gtgttatggttgcaactgacaactggaggggaatgaaaccatatctctgagagagtaagacccc 18226448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 408 - 536
Target Start/End: Complemental strand, 26308472 - 26308342
Alignment:
Q  408 gaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaac--ataaccctgatatataggaatttagggaggtgacatacctaatactag 505  Q
    |||| ||||||||||||| | ||||||||||||||||||| ||||||| |  |||||  ||| ||| ||  | |||||||||||||||| |||||| | |    
T  26308472 gaatcctatttaattttattgtcgtgcgtaagatttgtcttctctgaagcgaataacattgagataaagttacttagggaggtgacatatctaatattgg 26308373  T
Q  506 tgtatacatgtcttaatcaggaagtaactaa 536  Q
    || |||| || || ||||| |||||||||||    
T  26308372 tgaatacctgcctgaatcaagaagtaactaa 26308342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 539 - 657
Target Start/End: Complemental strand, 17635981 - 17635863
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||||||||||||||  ||  ||||||  |||||||||  || ||||||||||||| ||| || | | | | | ||||||    
T  17635981 taattaaggaaacaagtgacttcacgacttaaatctgcccggtaactctattctcctcacaccttggtaaggtagatgctgatcgcgctgcccatttgta 17635882  T
Q  639 gaactactgagagggagag 657  Q
    ||||||| ||||| |||||    
T  17635881 gaactaccgagagagagag 17635863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 539 - 608
Target Start/End: Complemental strand, 18416864 - 18416795
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaa 608  Q
    |||||| ||||||||||||||||||||||||||||| || | ||||| ||||| ||||| || |||||||    
T  18416864 taattatggaaacaagtgacttcacgacttaaatcagcccaataactacattcccctcgcaccttggtaa 18416795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 17830983 - 17830935
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcct 450  Q
    ||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  17830983 ttttttgaatcctatttaattttactatcgtgcgtaagagttgtctcct 17830935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Original strand, 19762423 - 19762478
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    ||||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||||    
T  19762423 ctatttagttttactgtagtgcgtaagatttgtctcctccgaatcataaccctgat 19762478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 467
Target Start/End: Complemental strand, 28254134 - 28254069
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctga 467  Q
    |||||| ||| ||||||||||||||| ||||| ||||||||| |||||| || | |||||||||||    
T  28254134 tttttcaaatcctatttaattttactgtcgtgtgtaagatttctctcctttggagcataaccctga 28254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 12356323 - 12356251
Alignment:
Q  43 cacatgaatatagaatcagagcatagattttagatcggaacagtagatcgtcagatcttcttgtcggtggggg 115  Q
    ||||| ||||||||||| ||||| ||| | ||||||| |||||||||| || |||||||||  ||||||||||    
T  12356323 cacataaatatagaatcggagcagagactgtagatcgaaacagtagattgtgagatcttctcatcggtggggg 12356251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 685 - 729
Target Start/End: Original strand, 19904051 - 19904095
Alignment:
Q  685 ggtgagggaacctttaggatactttgaatttaggacccctattat 729  Q
    |||||||||||||||||||||| |||||||||||| || ||||||    
T  19904051 ggtgagggaacctttaggataccttgaatttaggaaccttattat 19904095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 411 - 453
Target Start/End: Original strand, 17170699 - 17170741
Alignment:
Q  411 tgctatttaattttactatcgtgcgtaagatttgtctcctctg 453  Q
    ||||||||||||||||| | |||||||||| ||||||||||||    
T  17170699 tgctatttaattttactgttgtgcgtaagacttgtctcctctg 17170741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 655
Target Start/End: Complemental strand, 18938469 - 18938416
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggag 655  Q
    ||||||||||| ||| | |||||| | |||||||| ||||||||||||||||||    
T  18938469 ttggtaaggtacacgttgatagggctgcacgtttgcagaactactgagagggag 18938416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 26067041 - 26067004
Alignment:
Q  431 gtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  26067041 gtgcgtaagatttgtctcctctgatgcataaccctgat 26067004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 539 - 592
Target Start/End: Complemental strand, 26308327 - 26308274
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattct 592  Q
    ||||||| |||||||||||||||| ||||||||||| || | ||||||| ||||    
T  26308327 taattagcgaaacaagtgacttcatgacttaaatcagcccaataacttccttct 26308274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 2e-46; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 402 - 716
Target Start/End: Complemental strand, 7221047 - 7220728
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||    
T  7221047 ttttttgaatcctatttaattttactttcgtgcgcaagatttgtctcctctgaaacataaccctgatataaaggcacttagggaggtgacgtacctaata 7220948  T
Q  502 ctagtgtatacatgtcttaatcaggaagtaactaat-------ctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcc 594  Q
     | ||| |||  ||||||||||| ||||||| | ||        ||||| |||||||| ||| ||||| ||||||||| |  | | ||| |||||||| |    
T  7220947 ttggtgaatatctgtcttaatcatgaagtaattgattcagtaattaatttgggaaacatgtggcttcatgacttaaattagtccattaatttcattcttc 7220848  T
Q  595 tcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaa 694  Q
    |   || |||||||||||||||   ||| | || | ||||||||||||||| ||||||||| ||||   |||| |||||||||||||||||| || ||||    
T  7220847 tttcaccttggtaaggtagacg-agataagcttgcccgtttgtagaactaccgagagggagtgtgt-tgatgtccttctaagattcaataggcgatggaa 7220750  T
Q  695 cctttaggatactttgaattta 716  Q
    |||||||||||| |||||||||    
T  7220749 cctttaggataccttgaattta 7220728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 415 - 695
Target Start/End: Original strand, 14240054 - 14240339
Alignment:
Q  415 atttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactagtgtatacat 514  Q
    ||||||||||||| ||||||||||||| |||||||||| ||  |||||||||| |||  || | ||||| ||||| ||||||||||| | ||  |||| |    
T  14240054 atttaattttactgtcgtgcgtaagatctgtctcctctcaagtataaccctgagataacggtacttaggaaggtggcatacctaatattggttcatacct 14240153  T
Q  515 gtcttaatcaggaagtaactaatct----aattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaagg 610  Q
    | |  ||||||||| |||||||| |    ||||||||||| | ||||||| | ||||||||||| |  | | |||||||||| || | || |||||||||    
T  14240154 gcccgaatcaggaaataactaatttagtaaattagggaaataggtgacttgatgacttaaatcagcacaattacttcattcttcttgcaccttggtaagg 14240253  T
Q  611 tagacgcttatagggttacacgtttgtagaactactgagagggagagtgt-catatgttcttctaagattcaataggtgagggaac 695  Q
    |||||| | |||||| | |   |||||| |||||| | |||||||| ||| |  |||| ||||||||||||||||||||| |||||    
T  14240254 tagacgttaatagggctgcctttttgtataactaccgtgagggagaatgtgctgatgtccttctaagattcaataggtgatggaac 14240339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 16787149 - 16787290
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| |||| ||||||||||| |||  ||| ||||||||||||||||| |||||| | | ||||||||    
T  16787149 taattaaggaaacaagtgacttcatgacttaaatcagcctaataacttcattcacctataaccttggtaaggtagacgctgatagggctgcccgtttgta 16787248  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
     |||||| |||| ||||| |||  ||||| || ||||||||||    
T  16787249 taactaccgaga-ggagaatgtgctatgtactcctaagattca 16787290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 539 - 703
Target Start/End: Complemental strand, 17442919 - 17442756
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| | ||||| ||||||||| ||||||||| | || ||||||||  || | ||   || ||||||||||||||||| |||||||| | ||||||||    
T  17442919 taattaagaaaacaggtgacttcaggacttaaataagcccagtaactttgtttttcttttaccttggtaaggtagacgctgatagggtttcccgtttgta 17442820  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||| ||||||| ||||||  ||||| |||||||||||| |||| ||| |||||||||||||    
T  17442819 gaactaccgagagggcgagtgtgctatgtacttctaagattc-atagatgaaggaacctttagga 17442756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 539 - 654
Target Start/End: Complemental strand, 34481637 - 34481522
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| |||||||||||||| | ||||| ||||||||||| || || ||||||||| || | |||||| |||  |||||||    
T  34481637 taattaaggaaacaagtgacttcatgacttaaatcaacccaataactgcattctcctcgcacattcgtaaggtaggcgttgatagggctacctgtttgta 34481538  T
Q  639 gaactactgagaggga 654  Q
    ||||||| ||||||||    
T  34481537 gaactaccgagaggga 34481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 27117136 - 27117278
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||  |||||||||||||||   |||||||| |||| | ||||||||||||||||| |||||| |   | |||||     
T  27117136 taattaaggaaacaagtgacttcaggaagtaaatcaacctagtagaatcattctcttcgaccgttggtaaggtagacgctaatagggctgtccatttgtt 27117235  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||| ||| ||||||| |||  |||||  ||||||||||||    
T  27117236 gaactattgaaagggagaatgtgctatgtgtttctaagattca 27117278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 17443155 - 17443099
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  17443155 gctatttagttttactatagtgcgtaagatttgtctcctttgaagcataaccctgat 17443099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 16113597 - 16113455
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||| |||||||||| ||||| | ||| | |||| | |||  || ||||||||||||||||| ||||||||    |||||||    
T  16113597 taattaaggaaacaagtgactttacgacttaaagcaacccaataaatccatttttctcacaccttggtaaggtagacgctgatagggttgactgtttgta 16113498  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||  || || || |||||  || || |||||||||||||    
T  16113497 gaactatcgaaagagaaagtgtgctaggtacttctaagattca 16113455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 602 - 660
Target Start/End: Complemental strand, 44796008 - 44795950
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||||||||| | ||||| || | ||||||||||||||||||||||||||||||    
T  44796008 ttggtaaggtagacgttgataggattgcccgtttgtagaactactgagagggagagtgt 44795950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 546 - 701
Target Start/End: Complemental strand, 15299689 - 15299537
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactac 645  Q
    |||||||| |||||||  ||||||||||| || |  ||||||||| | |||| || ||||||||||||||| | ||||||||    ||||||||||||||    
T  15299689 ggaaacaattgacttcgtgacttaaatcatccca--aacttcattattctcgcaccttggtaaggtagacgatgatagggttgtctgtttgtagaactac 15299592  T
Q  646 tgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 701  Q
     ||| ||||| ||||  | ||| ||||||||| || |||| |||| ||||||||||    
T  15299591 cgagtgggagggtgtgttgtgtacttctaagactc-atagatgagagaacctttag 15299537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 585
Target Start/End: Complemental strand, 17837934 - 17837888
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaact 585  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||    
T  17837934 taattaaggaaacaagtgacttcacgacttaaatcatcccagtaact 17837888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 26580906 - 26580855
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaa 455  Q
    |||||||||| |||||||||||||||||  || |||||||||||||||||||||    
T  26580906 tttttcgaatcctatttaattttactat--tgtgtaagatttgtctcctctgaa 26580855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 587 - 660
Target Start/End: Original strand, 15812600 - 15812673
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    |||||||||||| | |||||||||||||| || |||| | ||| | |||||||||| || ||||||||||||||    
T  15812600 cattctcctcgacccttggtaaggtagacactgatagagctacccatttgtagaaccacagagagggagagtgt 15812673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 16360523 - 16360454
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggaga 656  Q
    |||||||||||| | ||||||||||||||| | |||| | | | ||||||||||||||| ||||||||||    
T  16360523 cattctcctcgacccttggtaaggtagacgttgatagagctgctcgtttgtagaactaccgagagggaga 16360454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 17838183 - 17838129
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||| ||||| | | ||||||||||||||||||||||||| |||||| |||||    
T  17838183 tatttatttttattgtagtgcgtaagatttgtctcctctgaagcataacactgat 17838129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 33713553 - 33713502
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaa 455  Q
    |||||||||| |||||||||||||||||  | ||||||||||||||| ||||||    
T  33713553 tttttcgaatcctatttaattttactat--ttcgtaagatttgtctcttctgaa 33713502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 8697966 - 8698007
Alignment:
Q  411 tgctatttaattttactatcgtgcgtaagatttgtctcctct 452  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  8697966 tgctatttagttttactattgtgcgtaagatttgactcctct 8698007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 16786898 - 16786939
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctg 453  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  16786898 gctatttagttttactgtagtgcgtaagatttgtctcctctg 16786939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 1e-44; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 402 - 748
Target Start/End: Complemental strand, 19901445 - 19901097
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||| ||| ||||||||||||||| |||||  |||||||||||| |||||||  |||||||||||||| |   | | |||||| ||||||||||||||    
T  19901445 tttttctaatcctatttaattttactgtcgtgtataagatttgtcttctctgaagtataaccctgatataaaatcactcagggagatgacatacctaata 19901346  T
Q  502 ctagtgtatacatgtcttaatcaggaagtaactaatct---aattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcga 598  Q
     | ||| |||| || ||||||||||| ||||||| | |   ||||||| ||||| ||||||||| |||||||||||||| |||||||||||||| ||       
T  19901345 tttgtgaatacctggcttaatcaggatgtaactagtttagcaattaggtaaacatgtgacttcatgacttaaatcaacc-agtaacttcattcttctttc 19901247  T
Q  599 actttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt-catatgttcttctaagattcaataggtgagggaacct 697  Q
    |  |||||||||||| |    |||||| | ||||| ||||||||||| |||||||||| ||| |  || | ||||||||||| ||||||  | |||||||    
T  19901246 atcttggtaaggtaggc-aagatagggatgcacgtctgtagaactaccgagagggagattgtgctgatctccttctaagattaaataggcaaaggaacct 19901148  T
Q  698 ttaggatactttgaatttaggacccctattatccatcattgtttcaaatac 748  Q
    |||| |||| |||||||||| | ||||||||| | ||||||||||||||||    
T  19901147 ttagcataccttgaatttagaaaccctattatacgtcattgtttcaaatac 19901097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 554 - 757
Target Start/End: Original strand, 1832991 - 1833193
Alignment:
Q  554 gtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagaggg 653  Q
    |||| |||| || |||||||| ||  |||| ||||||||||||| || ||| ||||||||||||| |||||| | | |||||||| |||||  |||||||    
T  1832991 gtgaattcatgagttaaatcagccatgtaagttcattctcctcgcaccttgttaaggtagacgctgatagggctgcccgtttgtaaaactagcgagaggg 1833090  T
Q  654 agagtgtcatatgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatacttacg 753  Q
    |||||||  ||||| |||| ||||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||   |||||||||||||||| || |    
T  1833091 agagtgtgctatgtacttcaaagattcgatagctgagggaacctttatgatac-ttgaatttaggaaccctattatttgtcattgtttcaaatacctatg 1833189  T
Q  754 agaa 757  Q
    ||||    
T  1833190 agaa 1833193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 406 - 691
Target Start/End: Original strand, 18448233 - 18448518
Alignment:
Q  406 tcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactag 505  Q
    |||| ||||||||||||||||| | |||||||||||||||||| |||  |  ||||||||||||  |||| | ||| ||||||||||||| ||||| | |    
T  18448233 tcgattgctatttaattttactgtagtgcgtaagatttgtctcgtctagagaataaccctgataactaggcacttatggaggtgacatacttaatattgg 18448332  T
Q  506 tgtatacatgtcttaatcaggaagtaactaat--ctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaacttt 603  Q
    | ||||| || |  |||||| ||||||||| |   ||| || ||||||| ||||||||||||||||||| | ||  |||||||||||||||| | || ||    
T  18448333 tttatacctgccaaaatcagcaagtaactagttagtaactaaggaaacatgtgacttcacgacttaaattagcccggtaacttcattctccttgcacctt 18448432  T
Q  604 ggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagg 691  Q
    || ||||||||||  | | ||| | | ||||||||||||||  ||||||| ||||||  ||||  |||||||||||||||||| ||||    
T  18448433 ggaaaggtagacg--tttggggcttcccgtttgtagaactatcgagagggggagtgtgctatgcacttctaagattcaataggcgagg 18448518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 539 - 678
Target Start/End: Complemental strand, 22526966 - 22526827
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||||||||||| |||| |||||||||||||||| ||  |||||||| |||||||||||| |||||||||||||| || |||| | | | ||||||||    
T  22526966 taattagggaaacatgtgatttcacgacttaaatcagccccgtaacttccttctcctcgaaccttggtaaggtagacactgatagagctgcccgtttgta 22526867  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagat 678  Q
     ||| |||||  | ||||||||  ||||| ||||||||||    
T  22526866 aaacaactgattgagagagtgtgttatgtgcttctaagat 22526827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 602 - 679
Target Start/End: Original strand, 12839258 - 12839335
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagatt 679  Q
    |||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  12839258 ttggtaaggtagacgcttatagggatgcccgtttgtagaactaccgagagggagagtgtgttatgtacttctaagatt 12839335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 408 - 532
Target Start/End: Original strand, 1832736 - 1832859
Alignment:
Q  408 gaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactagtg 507  Q
    ||||||||||||| |||||  | |||||||||||||||||| | || | ||||||| |||||  |||||| ||||||||||||||||||||||| | ||     
T  1832736 gaatgctatttaactttaccgtagtgcgtaagatttgtctcatatggagcataaccttgataactaggaacttagggaggtgacatacctaatattggtt 1832835  T
Q  508 tatacatgtcttaatcaggaagtaa 532  Q
    ||||| | || ||||||||||||||    
T  1832836 tatacctatc-taatcaggaagtaa 1832859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 25024119 - 25024040
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgct 618  Q
    |||||| |||||||||||||| || ||||||||||| || ||||| | |||||||||||| | |||||||||||||||||    
T  25024119 taattaaggaaacaagtgactgcatgacttaaatcatcccagtaaatccattctcctcgacccttggtaaggtagacgct 25024040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 25120673 - 25120747
Alignment:
Q  586 tcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    |||||||| | |||| ||||||||||||| ||| |||||| | | ||||||||||||||||||||||||||||||    
T  25120673 tcattctcattgaaccttggtaaggtagatgctgatagggctgcccgtttgtagaactactgagagggagagtgt 25120747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 539 - 700
Target Start/End: Original strand, 11520536 - 11520696
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||| |||||| ||||||| ||||| || ||||||| |||||| || | || ||  ||||||||||||| ||||||||   ||||||||    
T  11520536 taattaaggaaacaattgacttaacgacttcaatcagcccagtaactccattcttcttgcacctttctaaggtagacgctgatagggttgttcgtttgta 11520635  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaaccttta 700  Q
    ||||| | |||| || ||||||  | ||| |||||||||||  |||| |||||||| |||||    
T  11520636 gaacttccgagatggtgagtgtgttgtgtgcttctaagatt-tatagatgagggaatcttta 11520696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 22527207 - 22527116
Alignment:
Q  410 atgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||| ||||||    ||||  ||| | |||||||||||| ||||||||||    
T  22527207 atgctatttaacttgactgtcgtgcgtaagatttgtctcctctgaagcataacatcaatattcaggcacttagggaggtgatatacctaata 22527116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 632 - 733
Target Start/End: Complemental strand, 10107667 - 10107565
Alignment:
Q  632 gtttgtagaactactgagagggagagtgtcat-atgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatc 730  Q
    ||||||||||||||||||||||||| | |  | |||| |||||||||||||||||  ||||| |||||| ||| |||  |||||||||| ||||| ||||    
T  10107667 gtttgtagaactactgagagggagaatatgttgatgtccttctaagattcaatagacgagggtaccttttggaaactgagaatttaggaaccctaatatc 10107568  T
Q  731 cat 733  Q
    |||    
T  10107567 cat 10107565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 5956607 - 5956538
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggaga 656  Q
    |||||||||||| | ||||||||||||||||| |||||| | | | ||||||||||||| ||||||||||    
T  5956607 cattctcctcgatccttggtaaggtagacgctaatagggctgcccatttgtagaactaccgagagggaga 5956538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 587 - 660
Target Start/End: Original strand, 9850886 - 9850959
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||| || | |||||||||||||| || ||||||||   ||||||||||||||| ||||||||||||||    
T  9850886 cattctccttgacccttggtaaggtagacactgatagggttgtccgtttgtagaactacagagagggagagtgt 9850959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 539 - 677
Target Start/End: Original strand, 9264416 - 9264553
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||| ||||||||| || ||||||| |||  ||||| ||||||||||| || | ||| ||||| | ||| |||||||| | ||||| ||    
T  9264416 taattaaggaaacaaatgacttcacaacctaaatcagcctgataactccattctcctcg-acctgggtcaggtaaatgctgatagggttgcccgtttata 9264514  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaaga 677  Q
    |||||||  ||||||| | |||  ||||| |||||||||    
T  9264515 gaactaccaagagggaaaatgtgctatgtacttctaaga 9264553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 12838960 - 12839013
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccct 465  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||  ||||||||    
T  12838960 gctatttatttttactatagtgcataagatttgtctcctctgaagtataaccct 12839013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 605 - 660
Target Start/End: Original strand, 4215027 - 4215082
Alignment:
Q  605 gtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    |||||||||||| | ||||| || |||||||||||||||||| |||| ||||||||    
T  4215027 gtaaggtagacggtgataggattgcacgtttgtagaactactaagagagagagtgt 4215082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 556 - 659
Target Start/End: Complemental strand, 5529116 - 5529013
Alignment:
Q  556 gacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggag 655  Q
    ||||||| |||||||||||| | ||||| | |||||| ||   || ||||||||||| ||||| |||||| ||| ||||||| ||||||  ||||||||     
T  5529116 gacttcatgacttaaatcaatccagtaattccattcttctttcaccttggtaaggtaaacgctaatagggctacccgtttgttgaactagcgagagggat 5529017  T
Q  656 agtg 659  Q
    ||||    
T  5529016 agtg 5529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 602 - 657
Target Start/End: Complemental strand, 17672625 - 17672570
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    ||||||||||||||||| |||||| | | |||||||||||||||| |||| |||||    
T  17672625 ttggtaaggtagacgctgatagggctgcccgtttgtagaactactaagagtgagag 17672570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 406 - 501
Target Start/End: Complemental strand, 23975111 - 23975016
Alignment:
Q  406 tcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||| ||||||||||||||||| | ||| || | ||||||||||||| || ||||||| |||||  | || | |||||||||| |||||| |||||    
T  23975111 tcgattgctatttaattttactgtagtgtgttatatttgtctcctctaaagcataaccttgataacttggcacttagggaggtcacatacttaata 23975016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 546 - 680
Target Start/End: Original strand, 26115316 - 26115450
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttca-ttctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaacta 644  Q
    ||||||||||||||||| ||||| ||||| || ||||||| || || |||||| || | ||||||||||||  | |||||  | | ||||| ||||||||    
T  26115316 ggaaacaagtgacttcatgactt-aatcagcccagtaactccatttttcctcgcacctcggtaaggtagactttgataggacttctcgtttatagaacta 26115414  T
Q  645 ctgagagggagagtgtcatatgttcttctaagattc 680  Q
    | |||| |||||||||  ||||| || |||||||||    
T  26115415 ccgagacggagagtgtgttatgtactcctaagattc 26115450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 777
Target Start/End: Complemental strand, 13587776 - 13587694
Alignment:
Q  697 tttaggatactttgaatttaggacccctattatccatcattgtttcaaatactta-cga-gaagtaagaccctacatgtaaac 777  Q
    |||| |||||||||||||||||| ||||||||||| || |||| |||||| | || |||  |||||||| |||||||||||||    
T  13587776 tttatgatactttgaatttaggaaccctattatccgtctttgtctcaaattcctatcgataaagtaagaacctacatgtaaac 13587694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 457 - 535
Target Start/End: Complemental strand, 23972172 - 23972094
Alignment:
Q  457 cataaccctgatatataggaatttagggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagtaacta 535  Q
    ||||||||||| | | ||| | ||||||||||||||||||||||| | ||| |||| || |  ||||||||||||||||    
T  23972172 cataaccctgagagaaaggtacttagggaggtgacatacctaatattggtgcatacctgccaaaatcaggaagtaacta 23972094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 2587401 - 2587259
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||| || ||||||||||||||||| ||||||||    ||||| |    
T  2587401 taattaaggaaacaagtgacttcatgacttaaatcagcctagtaacgtcattctcctcgcaccttggtaaggtagacgctgatagggttgtctgtttgga 2587302  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||||||||||||||||||  ||||| || ||||||||||    
T  2587301 gaactactgagagggagagtgtgctatgtactcctaagattca 2587259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 542 - 748
Target Start/End: Original strand, 23087705 - 23087911
Alignment:
Q  542 ttagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaa 641  Q
    ||||||||||| || | ||||| |||||||||| |  | ||| |||||||||||  ||  ||||||||||||||||| ||| || ||| ||||| || ||    
T  23087705 ttagggaaacatgtcatttcacaacttaaatcagctcattaatttcattctcctataatcttggtaaggtagacgctgataaggctacccgtttataaaa 23087804  T
Q  642 ctactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgttt 741  Q
     ||| ||||||||||||||  ||||  ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| | |||  |||||||||    
T  23087805 ataccgagagggagagtgtgttatgcgcttctaagattcaataggtgagggaacatttatgatactttgaatttaggatccctttaatctgtcattgttt 23087904  T
Q  742 caaatac 748  Q
    |||||||    
T  23087905 caaatac 23087911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 402 - 536
Target Start/End: Complemental strand, 32759327 - 32759194
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||| |||| |||||| |||||||||| ||||||| |||| ||||| |||||| ||||||||||| ||||||| | |||||||||||||||||||||||    
T  32759327 ttttttgaatcctatttgattttactattgtgcgtatgatt-gtctcatctgaagcataaccctgagatataggtacttagggaggtgacatacctaata 32759229  T
Q  502 ctagtgtatacatgtcttaatcaggaagtaactaa 536  Q
     | ||| ||||||  || |||||| || |||||||    
T  32759228 ttggtgaatacatacctgaatcagaaaataactaa 32759194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 24216228 - 24216086
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||| ||||||||||||||  |||||||||| ||||| ||| | || |||||| |||||||| | | |||| | |   ||||||    
T  24216228 taattaaggaaacaagtgacatcacgacttaaatccgcctagtaactccattcaccttgcaccttggtatggtagacgttgacagggcttcttatttgta 24216129  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||| ||||||||||| || || ||| |||||||||||||    
T  24216128 gaactaccgagagggagagagtgatgtgtacttctaagattca 24216086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 539 - 748
Target Start/End: Complemental strand, 10504315 - 10504105
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaa-ctttggtaaggtagacgcttatagggttacacgtttgt 637  Q
    |||| |||||||||||| |||||| |||||||||||  | ||||||||| |||| ||   | | |||||||||||||||   |||||||| | | |||||    
T  10504315 taatcagggaaacaagttacttcatgacttaaatcagtcgagtaacttcgttcttctttcatcattggtaaggtagacgag-atagggttgcccctttgt 10504217  T
Q  638 agaactactgagagggagagtgtcat-atgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcat 736  Q
    |||||||| ||||||||||||||  | ||||  ||||||||||||||||  || || |||||||||| | |  |||||||||| ||||| ||||| |  |    
T  10504216 agaactaccgagagggagagtgtgttgatgtctttctaagattcaatagacgatggtacctttaggacattgagaatttaggaaccctaatatccgtttt 10504117  T
Q  737 tgtttcaaatac 748  Q
    ||||||||||||    
T  10504116 tgtttcaaatac 10504105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 539 - 675
Target Start/End: Complemental strand, 14726107 - 14725971
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||||||  ||||||| || | ||||| |||||||||||||| ||||||||||| | | | ||| || | | ||||||||    
T  14726107 taattaaggaaacaagtgacttcacgaaataaatcatcccattaactccattctcctcgaaccttggtaaggtaaatgttgataaggctgctcgtttgta 14726008  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaa 675  Q
    ||| ||| |||||| ||| |||  ||||| |||||||    
T  14726007 gaattaccgagaggaagaatgtgttatgtacttctaa 14725971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 3357442 - 3357351
Alignment:
Q  410 atgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||| |||   ||  | |||||||| ||||||||||||||    
T  3357442 atgctatttaattttactattgtgggtaagatctgtctcctctgaagcataaccctaataccaagtcacttagggagatgacatacctaata 3357351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 620 - 741
Target Start/End: Original strand, 24180761 - 24180884
Alignment:
Q  620 atagggttacacgtttgtagaactactgagagggagagtgtcata-tgttcttctaagattcaataggtgagggaaccttt-aggatactttgaatttag 717  Q
    |||||||||| ||||| ||||||||  |||| |||||||||  || ||  ||||||||||||||||||  || |||||||| | |||| |||||||||||    
T  24180761 atagggttacccgtttatagaactatcgagatggagagtgtgctaatgcccttctaagattcaataggcaagtgaaccttttaagatattttgaatttag 24180860  T
Q  718 gacccctattatccatcattgttt 741  Q
    || ||||||||||| |||||||||    
T  24180861 gaaccctattatccgtcattgttt 24180884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 675 - 777
Target Start/End: Original strand, 28585530 - 28585633
Alignment:
Q  675 agattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatacttacgag-aagtaagaccctacatgt 773  Q
    ||||||||| || || | ||||||||||||||||||||||||||| || |||||||| |||||| ||||||||| |  ||| |||||||| |||||| ||    
T  28585530 agattcaatgggagatgaaacctttaggatactttgaatttaggaaccttattatccgtcattgcttcaaatacatctgagaaagtaagaacctacacgt 28585629  T
Q  774 aaac 777  Q
    ||||    
T  28585630 aaac 28585633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 10504468 - 10504410
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacata 460  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10504468 tttttctaatccaatttaattttactatcgtgcgtaagatttgtctcctctgaagcata 10504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 636 - 775
Target Start/End: Original strand, 9897685 - 9897826
Alignment:
Q  636 gtagaactactgagagggagagtgtcat-atgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatc 734  Q
    ||||||||||  |||||||||||||  | || | ||||| ||||| ||||||  ||||||||||||||||| ||| ||||||| | || ||||| || ||    
T  9897685 gtagaactacctagagggagagtgtgctgatttccttctgagatttaataggcaagggaacctttaggataatttaaatttagaaaccgtattacccgtc 9897784  T
Q  735 attgtttcaaatacttacgag-aagtaagaccctacatgtaa 775  Q
    |||||||||||||| |  ||| |||||||| |||||||||||    
T  9897785 attgtttcaaatacctctgagaaagtaagaacctacatgtaa 9897826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 799 - 923
Target Start/End: Original strand, 24187899 - 24188020
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtggatcagcaggtgcaac 898  Q
    ||||||||||||||||| | |  |||||| ||||||||| ||| |||||||||||||||||| |||  |||| |||| |||   ||||||||||||||||    
T  24187899 gtgtaatggttgcaactgaaagttggaggagaatgaactcatacctctgagagagtaagacctcacatgtacctacccgtg--tgatcagcaggtgcaac 24187996  T
Q  899 tagacaggctgatagccagtaaaac 923  Q
    | |||| ||||||||  ||||||||    
T  24187997 tcgaca-gctgataggtagtaaaac 24188020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 800 - 898
Target Start/End: Original strand, 23088010 - 23088105
Alignment:
Q  800 tgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtggatcagcaggtgcaac 898  Q
    ||||||||||| |||| |||| |||||||||||||||  ||| |||||||||||||||| ||||| ||||| |||| |||   ||||||||||||||||    
T  23088010 tgtaatggttgtaactgacaattggaggggaatgaacacatatctctgagagagtaaga-cccacacgtacctacccgtg--tgatcagcaggtgcaac 23088105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 9291479 - 9291600
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| || | ||||| |||| |||||  || || |||||  ||||||| |||||| | |  |||| ||    
T  9291479 taattaaggaaacaagtgacttcatgacttaaatcagcccaataactccattttcctcacaccttagtaagaaagacgctgatagggctgcctgtttata 9291578  T
Q  639 gaactactgagagggagagtgt 660  Q
     |||||| ||||||||||||||    
T  9291579 taactaccgagagggagagtgt 9291600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 794 - 875
Target Start/End: Original strand, 28585696 - 28585777
Alignment:
Q  794 ctccagtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacc 875  Q
    |||||||||||| ||||||| | ||| | ||||||||||||||  ||| |||||| ||||||||||||||| ||||| ||||    
T  28585696 ctccagtgtaatagttgcaattgacagcaggaggggaatgaacccatatctctgatagagtaagaccccacacgtacttacc 28585777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 14726352 - 14726297
Alignment:
Q  416 tttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatata 471  Q
    |||| ||||||| | ||||||||||||| ||||||||||| |||||||||||||||    
T  14726352 tttagttttactgtagtgcgtaagatttttctcctctgaagcataaccctgatata 14726297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 413 - 471
Target Start/End: Complemental strand, 14726427 - 14726369
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatata 471  Q
    ||||||| ||||||| | ||||||||||||||||||||||| | || ||||||||||||    
T  14726427 ctatttagttttactgtagtgcgtaagatttgtctcctctggagcaaaaccctgatata 14726369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 596 - 660
Target Start/End: Original strand, 22849953 - 22850017
Alignment:
Q  596 cgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||| |||||||||||||| || |||||  | | ||||||||||||||| ||||||||||||||    
T  22849953 cgaaccttggtaaggtagacactgataggactgcccgtttgtagaactaccgagagggagagtgt 22850017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 602 - 657
Target Start/End: Complemental strand, 4340379 - 4340324
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    ||||||||||||| ||| |||||||| | |||||||||||||||| |||| |||||    
T  4340379 ttggtaaggtagaagctgatagggtttcccgtttgtagaactactaagagtgagag 4340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 603 - 698
Target Start/End: Original strand, 22565629 - 22565723
Alignment:
Q  603 tggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctt 698  Q
    |||||||||| ||||| ||||||||    ||||||||||||||| |||| || |||||  ||||| |||||||||||| |||| |||| |||||||    
T  22565629 tggtaaggtaaacgctaatagggttgatagtttgtagaactactaagagagatagtgttctatgtacttctaagattc-atagatgagagaacctt 22565723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 414 - 465
Target Start/End: Original strand, 23644952 - 23645003
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccct 465  Q
    |||||||||||||| |  ||||||||||||||||| |||||| |||||||||    
T  23644952 tatttaattttactgttatgcgtaagatttgtctcatctgaagcataaccct 23645003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 703
Target Start/End: Complemental strand, 9726635 - 9726539
Alignment:
Q  606 taaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||||||||| |||||| | | ||||||||||||||  ||||  ||||||||  |||||  ||||||||||| ||||  || |||||||||||||    
T  9726635 taaggtagacgctgatagggctgcccgtttgtagaactatcgagaacgagagtgtgttatgtatttctaagattc-atagacgatggaacctttagga 9726539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 899
Target Start/End: Original strand, 28589145 - 28589243
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtggatcagcaggtgcaac 898  Q
    |||||||||||| |||| ||| ||| || ||||| |||  ||| |||| |||||||||||||||| | |||| ||||||||   |||||||| |||||||    
T  28589145 gtgtaatggttgaaactgacacctgaagtggaataaacccatatctctaagagagtaagaccccatgtgtacctacctgtg--tgatcagcatgtgcaac 28589242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 547 - 588
Target Start/End: Complemental strand, 32759171 - 32759130
Alignment:
Q  547 gaaacaagtgacttcacgacttaaatcaacctagtaacttca 588  Q
    |||||||||||||||| ||||||||||| |||| ||||||||    
T  32759171 gaaacaagtgacttcatgacttaaatcatcctaataacttca 32759130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 6e-34; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 554 - 660
Target Start/End: Complemental strand, 25348681 - 25348575
Alignment:
Q  554 gtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagaggg 653  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| | ||||||||||||||| |||||| | | |||||||||||||||||||||||    
T  25348681 gtgacttcacgacttaaatcagcccagtaacttcattctcctcgaacctcggtaaggtagacgctgatagggctgctcgtttgtagaactactgagaggg 25348582  T
Q  654 agagtgt 660  Q
    |||||||    
T  25348581 agagtgt 25348575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 539 - 703
Target Start/End: Complemental strand, 26291766 - 26291603
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||||||||||||||| || | ||||| ||||||||||  |||||||||||||||||||| |||||| |    |||||||    
T  26291766 taattaaggaaacaagtgacttcacgacttaaatcagcccaataactccattctcctcacactttggtaaggtagacgctcatagggctgtcagtttgta 26291667  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
     |||||| |||| |||||||||  ||||| |||||||||||| |||| |||| ||||||||||||    
T  26291666 aaactaccgagaaggagagtgtgttatgtacttctaagattc-atagatgagagaacctttagga 26291603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 45621321 - 45621463
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||| | ||||||||   ||||||||    
T  45621321 taattaaggaaacaagttacttcacgacttaaatcagcctactaacttcattctcctcgcaccttggtaaggtagacgttgatagggttgtccgtttgta 45621420  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||||  ||||| ||| |||| ||||| |||||||| ||||    
T  45621421 gaactaccaagaggaagattgtcttatgtacttctaaggttca 45621463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 539 - 703
Target Start/End: Complemental strand, 25939828 - 25939665
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||| ||||||||| ||||||||| |  | ||||| | |||||||||   || ||||||||||||||||| |||||  | | ||||||||    
T  25939828 taattaaggaaacatgtgacttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacgctgataggtctccccgtttgta 25939729  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||| ||||||||||||||  ||||||||| |||||||| |||| |||||||||||||||||    
T  25939728 gaactaccgagagggagagtgttctatgttcttttaagattc-atagatgagggaacctttagga 25939665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 548 - 748
Target Start/End: Original strand, 8502545 - 8502753
Alignment:
Q  548 aaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactg 647  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||| |  || ||| ||||||||||  | || |||||   ||||||||||||||| |    
T  8502545 aaacatgtgacttcacgacttaaatcaatccattaacttcattctccgcacaccttgttaaggtagacattgattgggttgtccgtttgtagaactaccg 8502644  T
Q  648 agagggagag--------tgtcatatgttcttctaagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgt 739  Q
    |||| |||||        |||  ||||| ||| |||||||||||||| ||||  |||||||||||||| |||||||| ||  | |||||||| |||||||    
T  8502645 agagagagagagagagagtgtgctatgtacttttaagattcaataggcgaggatacctttaggatactctgaatttatgaaacatattatccgtcattgt 8502744  T
Q  740 ttcaaatac 748  Q
    |||||||||    
T  8502745 ttcaaatac 8502753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 520 - 645
Target Start/End: Complemental strand, 9239902 - 9239775
Alignment:
Q  520 aatcaggaagtaactaatc--taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgc 617  Q
    |||||||||||||||| |   ||||||  |||| | |||||||||||||||||| ||||||| |||||||||| ||||||||  ||||||||||||||||    
T  9239902 aatcaggaagtaactagttagtaattacagaaatatgtgacttcacgacttaaaccaacctaataacttcattttcctcgaatcttggtaaggtagacgc 9239803  T
Q  618 ttatagggttacacgtttgtagaactac 645  Q
    | |||||||| | | ||||| |||||||    
T  9239802 taatagggttgcccatttgttgaactac 9239775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 432 - 684
Target Start/End: Original strand, 41789895 - 41790140
Alignment:
Q  432 tgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagta 531  Q
    ||||||||||||||||||| || | |||||||||||||  |||| | ||||| ||||||||||||||||| | ||| |       |  ||||||||||||    
T  41789895 tgcgtaagatttgtctcctatggagcataaccctgataactaggcacttaggaaggtgacatacctaatattggtgca-------caaaatcaggaagta 41789987  T
Q  532 actaat--ctaattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttac 629  Q
    |||| |   ||||||  |||||| ||||||||| ||||||| ||| |  ||||||||||||||||||| || |||||||  || |||  | |  |  |||    
T  41789988 actagttagtaattaatgaaacatgtgacttcatgacttaactcagctcagtaacttcattctcctcgcaccttggtaaaatatacg--tctgagactac 41790085  T
Q  630 acgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaata 684  Q
     ||||||||||||||| |||||||||| |||  ||||| ||||||||||||||||    
T  41790086 ccgtttgtagaactaccgagagggagaatgtgctatgtacttctaagattcaata 41790140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 45553825 - 45553683
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| |  ||||||| ||||||||||  || |||||||||||| |||| |||||| | | | ||||||    
T  45553825 taattaaggaaacaagtgacttcatgacttaaatcagcacagtaactccattctcctcacaccttggtaaggtagtcgctgatagggctgcccatttgta 45553726  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||||  ||||| |||||||  ||||  || ||||||||||    
T  45553725 gaactaccaagaggaagagtgtgttatgcactcctaagattca 45553683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 16075842 - 16075963
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||| |||||||||||||||  | || |||||||  |||||||||| || ||||| |||||||| || |||||| ||   |||||||    
T  16075842 taattaaggaaacaagtaacttcacgacttaaaatagcccagtaactcaattctcctcgcaccttggtgaggtagacactgatagggatatctgtttgta 16075941  T
Q  639 gaactactgagagggagagtgt 660  Q
    ||||||| ||||||||||||||    
T  16075942 gaactaccgagagggagagtgt 16075963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 8502302 - 8502389
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||  |||| | ||| ||||  |||||||||||||    
T  8502302 tatttaattttactatagtgcgtaagatttgtctcctctgaagcataaccatgataactaggtacttaaggagacgacatacctaata 8502389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 546 - 660
Target Start/End: Original strand, 21072178 - 21072292
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactac 645  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||  || | ||||||||||| | | |||||| |   |||| ||||||||||    
T  21072178 ggaaacaagtgacttcatgacttaaatcagcctagtaactccattctcctcatacctcggtaaggtagatgatgatagggctggtcgttagtagaactac 21072277  T
Q  646 tgagagggagagtgt 660  Q
     |||| | |||||||    
T  21072278 cgagaagcagagtgt 21072292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 27420301 - 27420245
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  27420301 gctatttagttttattatagtgcgtaagatttgtctcctctgaagcataaccctgat 27420245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 9243525 - 9243432
Alignment:
Q  442 ttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagtaacta 535  Q
    ||||||| |||||| ||||||||||||  ||||| | |||| || |||| |||||||||| |  ||||||| |||||||||||||| |||||||    
T  9243525 ttgtctcatctgaagcataaccctgatgcataggcacttagagaagtgatatacctaatattgatgtatacttgtcttaatcaggatgtaacta 9243432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 412 - 501
Target Start/End: Complemental strand, 25348934 - 25348845
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    |||||||| || |||| || ||||||||||||||||||||| || ||||||| |||||| |||  | ||||||| |||||||| ||||||    
T  25348934 gctatttagttctactgtcatgcgtaagatttgtctcctcttaagcataaccttgatatctagacacttagggaagtgacataactaata 25348845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 412 - 468
Target Start/End: Complemental strand, 27419155 - 27419099
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    |||||||| ||||| ||| ||||||||||||||| ||||||||| ||||||||||||    
T  27419155 gctatttagttttattatagtgcgtaagatttgtttcctctgaagcataaccctgat 27419099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 799 - 870
Target Start/End: Complemental strand, 9239569 - 9239498
Alignment:
Q  799 gtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtac 870  Q
    ||||||||||| ||| | |||| | ||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  9239569 gtgtaatggttacaagtgacaattagagggtaatgaactcatatctctgagagagtaagaccccaagcgtac 9239498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 554 - 593
Target Start/End: Original strand, 26652705 - 26652744
Alignment:
Q  554 gtgacttcacgacttaaatcaacctagtaacttcattctc 593  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26652705 gtgacttcatgacttaaatcaacctagtaacttcattctc 26652744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 660
Target Start/End: Original strand, 19199628 - 19199686
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||||||||||| |||||| | | | |||||||||||||||||| |||||||||    
T  19199628 ttggtaaggtagacgctgatagggctgcccatttgtagaactactgagaaggagagtgt 19199686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 27418853 - 27418756
Alignment:
Q  603 tggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 701  Q
    |||||||||||||||  |||||| ||  |||||||| ||||||||||||| ||| |||  |||||  ||||||||||| |||| ||||||||| |||||    
T  27418853 tggtaaggtagacgcggatagggataaccgtttgtacaactactgagaggaagaatgtgttatgtatttctaagattc-atagatgagggaacatttag 27418756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 701
Target Start/End: Complemental strand, 27419999 - 27419902
Alignment:
Q  603 tggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttag 701  Q
    |||||||||||||||  |||||| ||  |||||||| ||||||||||||| ||| |||  |||||  ||||||||||| |||| ||||||||| |||||    
T  27419999 tggtaaggtagacgcgaatagggataaccgtttgtacaactactgagaggaagaatgtgttatgtatttctaagattc-atagatgagggaacatttag 27419902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 794 - 863
Target Start/End: Original strand, 8502833 - 8502902
Alignment:
Q  794 ctccagtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagacccca 863  Q
    |||| ||||||||||||||||| | | || |||||||| ||||| | | |||||||||||||||||||||    
T  8502833 ctccggtgtaatggttgcaacttaaagctagaggggaaagaactcacatctctgagagagtaagacccca 8502902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 34368642 - 34368593
Alignment:
Q  403 ttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctga 454  Q
    ||||||||| |||||||||||||||||  |||||||||||||||| ||||||    
T  34368642 ttttcgaatcctatttaattttactat--tgcgtaagatttgtcttctctga 34368593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 692 - 747
Target Start/End: Complemental strand, 9239723 - 9239668
Alignment:
Q  692 gaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaata 747  Q
    ||||| ||||||||||||||||||| || |||||  |||| |||||||||||||||    
T  9239723 gaaccattaggatactttgaatttaagaaccctaccatccgtcattgtttcaaata 9239668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 13777077 - 13777008
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggaga 656  Q
    |||| ||||||| | ||||||||||||||||| ||||||   | ||||||||||| ||| ||||||||||    
T  13777077 cattatcctcgacccttggtaaggtagacgctgatagggcatcccgtttgtagaaataccgagagggaga 13777008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 16075587 - 16075628
Alignment:
Q  412 gctatttaattttactatcgtgcgtaagatttgtctcctctg 453  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  16075587 gctatttaattttactatagtgcgtaatatttgtttcctctg 16075628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 651
Target Start/End: Complemental strand, 22568239 - 22568190
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagag 651  Q
    ||||||||||||||||| |||||| | | |||||||||||||||| ||||    
T  22568239 ttggtaaggtagacgctgatagggctgcccgtttgtagaactactaagag 22568190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 17977303 - 17977161
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| | || ||||||||| ||||||| |||||| | | ||||||||    
T  17977303 taattatgaaaacaagtgacttcacgacttaaatcagcctagtaactccattctccttgcaccttggtaaggcagacgctgatagggcttcccgtttgta 17977204  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
     |||||| |||||||| |||||  ||||| |||||||||||||    
T  17977203 aaactaccgagagggatagtgtgctatgtacttctaagattca 17977161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 539 - 682
Target Start/End: Original strand, 5052330 - 5052473
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||| |||| |||| || ||||||||||| || ||||||||||||| ||| |||||||| |  |||||||    
T  5052330 taattaaggaaacaagtgacttcatgacttaaattaacccagtagctccattctcctcgcaccttggtaaggtagatgctgatagggttgcctgtttgta 5052429  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaa 682  Q
    ||||||| ||| ||||||||||  ||||| ||||||||| ||||    
T  5052430 gaactacagagtgggagagtgtgttatgtacttctaagactcaa 5052473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 410 - 537
Target Start/End: Original strand, 24519810 - 24519939
Alignment:
Q  410 atgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatact--agtg 507  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||  |||| | ||||| ||||||||||||||||  |    |     
T  24519810 atgctatttaattttactatcgtgcgtaagatttatctcctttgaattataaccctgatacctaggcacttaggaaggtgacatacctaattttgatatt 24519909  T
Q  508 tatacatgtcttaatcaggaagtaactaat 537  Q
    |||| |||||||||||||||||||||||||    
T  24519910 tatatatgtcttaatcaggaagtaactaat 24519939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 546 - 681
Target Start/End: Complemental strand, 24905317 - 24905182
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactac 645  Q
    |||||||||||||||||| ||||||||||||| | ||| | ||||||||||| || |||||||||||||| || |||||| | |  ||||||||||||||    
T  24905317 ggaaacaagtgacttcaccacttaaatcaacccaataagtccattctcctcgcaccttggtaaggtagacactgatagggctgcctgtttgtagaactac 24905218  T
Q  646 tgagagggagagtgtcatatgttcttctaagattca 681  Q
     |||||  |||||||  ||||| ||||| |||||||    
T  24905217 cgagagatagagtgttctatgtacttcttagattca 24905182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 413 - 537
Target Start/End: Complemental strand, 14076370 - 14076244
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaatact--agtgtat 510  Q
    |||||| |||||| | ||| | |||||||||||||||| ||||  ||||||||||||  |||| | ||||||||||||| |||||||||||    | |||    
T  14076370 ctattttattttattgtcgggtgtaagatttgtctcctttgaagtataaccctgatacctaggcacttagggaggtgacgtacctaatactgatatttat 14076271  T
Q  511 acatgtcttaatcaggaagtaactaat 537  Q
    |  ||||||||||||||||||||||||    
T  14076270 atttgtcttaatcaggaagtaactaat 14076244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 539 - 681
Target Start/End: Complemental strand, 5855787 - 5855645
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||||||||  |||||||||| | || ||||||| |  | | ||   || | |||||||| ||||||  || |||| | ||||||||    
T  5855787 taattaaggaaacaagtgactttgcgacttaaattagcccagtaactccgcttttctttcacctcggtaaggtggacgctggtaaggttgcccgtttgta 5855688  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||||||||||||||||||  ||||| |||||||||||||    
T  5855687 gaactactgagagggagagtgtgttatgtgcttctaagattca 5855645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 581 - 703
Target Start/End: Complemental strand, 17965661 - 17965540
Alignment:
Q  581 taacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattc 680  Q
    |||||||||||||||   || ||||||||||||||||| |||||| |    |||||||||| |||| |||||||||||||  ||||| ||||||||||||    
T  17965661 taacttcattctcctttcaccttggtaaggtagacgctgatagggctgtctgtttgtagaattactaagagggagagtgtgttatgtacttctaagattc 17965562  T
Q  681 aataggtgagggaacctttagga 703  Q
     |||| | |||| ||||||||||    
T  17965561 -atagataagggtacctttagga 17965540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 603 - 774
Target Start/End: Original strand, 24119189 - 24119361
Alignment:
Q  603 tggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcat-atgttcttctaagattcaataggtgagggaacctttag 701  Q
    ||||||||||||||   |||||||| | ||||||||||||||  ||||||||||||||  | |||| ||||||||||||||||  |||||| |||| |||    
T  24119189 tggtaaggtagacgag-atagggttgcccgtttgtagaactatagagagggagagtgtgttgatgtccttctaagattcaataaatgagggtacctatag 24119287  T
Q  702 gatactttgaatttaggacccctattatccatcattgtttcaaatacttacgag-aagtaagaccctacatgta 774  Q
    || |||  ||||||| || ||||| ||||  | ||||||| ||||||||  ||| |||||||| |||| |||||    
T  24119288 gacactaagaatttatgaaccctaatatctgttattgttttaaatacttctgagaaagtaagaacctaaatgta 24119361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 15061472 - 15061517
Alignment:
Q  422 tttactatcgtgcgtaagatttgtctcctctgaaacataaccctga 467  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  15061472 tttactgtcgtgcgtaagatttgtctcctttgaaacataaccctga 15061517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 402 - 535
Target Start/End: Complemental strand, 24080413 - 24080280
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgacatacctaata 501  Q
    ||||||| || ||||||||||||||| ||||||||||||||| | ||||||| | ||| ||| | | |||     | ||||| ||||||||||||||| |    
T  24080413 tttttcgtatcctatttaattttactgtcgtgcgtaagatttatttcctctggagcattaccttaagataacaacacttaggaaggtgacatacctaaca 24080314  T
Q  502 ctagtgtatacatgtcttaatcaggaagtaacta 535  Q
     | ||| |||| ||||| ||||||||||||||||    
T  24080313 ttggtgaatacttgtctgaatcaggaagtaacta 24080280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 822 - 905
Target Start/End: Original strand, 24119454 - 24119535
Alignment:
Q  822 tggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggtggatcagcaggtgcaactagacag 905  Q
    ||||||| |||||||  ||| || ||||||||||||||||||| ||||||||||||||   ||| ||||||||||||| |||||    
T  24119454 tggagggaaatgaacccatacctttgagagagtaagaccccacacgtacatacctgtg--tgattagcaggtgcaacttgacag 24119535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 587 - 666
Target Start/End: Complemental strand, 24645491 - 24645412
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatg 666  Q
    ||||||||| || ||||||||||||||||| | |||||| |   ||||||||||||||  ||||||||||||||| ||||    
T  24645491 cattctccttgacctttggtaaggtagacgttgataggggtgtccgtttgtagaactaacgagagggagagtgtcctatg 24645412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 24905462 - 24905407
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgat 468  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| ||||| ||||||    
T  24905462 ctatttagttttactatagtgcgtaagatttgtctcttctgaagcataaacctgat 24905407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 660
Target Start/End: Complemental strand, 6885597 - 6885539
Alignment:
Q  602 ttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||||||||||| ||| || | | |||||||||||||||||||| |||||||||    
T  6885597 ttggtaaggtagacgctaataaggctgcccgtttgtagaactactgagaaggagagtgt 6885539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 681
Target Start/End: Original strand, 15064830 - 15064908
Alignment:
Q  603 tggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    |||||||||||||||| ||| || | |  |||||||||||||| ||||||||||||||  ||||| |||||| ||||||    
T  15064830 tggtaaggtagacgctgataaggctgcctgtttgtagaactaccgagagggagagtgtgctatgtgcttctatgattca 15064908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 24381227 - 24381276
Alignment:
Q  548 aaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcg 597  Q
    ||||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  24381227 aaacaagtgacttcatgacttaaatcagccaagtaactccattctcctcg 24381276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 673 - 757
Target Start/End: Complemental strand, 17972772 - 17972688
Alignment:
Q  673 taagattcaataggtgagggaacctttaggatactttgaatttaggacccctattatccatcattgtttcaaatacttacgagaa 757  Q
    ||||||||||| |  |||||||||||||||| ||  ||||||||||| ||||| |||||  ||||| ||||||||| || |||||    
T  17972772 taagattcaattgacgagggaacctttaggacacagtgaatttaggaaccctaatatccgacattgattcaaatacctatgagaa 17972688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 24115046 - 24115091
Alignment:
Q  406 tcgaatgctatttaattttactatcgtgcgtaagatttgtctcctc 451  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||||    
T  24115046 tcgaatcctatttaaatttactgtcgtgcgtaagatttctctcctc 24115091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 68; Significance: 9e-30; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 539 - 678
Target Start/End: Complemental strand, 4567 - 4428
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| || ||| ||||||||| ||| |||||| | | ||| ||||    
T  4567 taattaaggaaacaagtgacttcatgacttaaatcagcccaataacttcattctcctcgcaccttgataaggtagatgctaatagggctgcccgtgtgta 4468  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagat 678  Q
    ||||||| ||||||||||||||  ||||| ||||||||||    
T  4467 gaactaccgagagggagagtgtgctatgtacttctaagat 4428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 539 - 681
Target Start/End: Original strand, 820923 - 821065
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||||||||||| |||||||||| || ||||||| |||||| || | || || |||||||||||||| |||| | | | ||||||||    
T  820923 taattaaggaaacaagtgacttcacaacttaaatcagcccagtaactccattcttcttgcacattcgtaaggtagacgctgatagagcttcccgtttgta 821022  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattca 681  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||    
T  821023 gaactaccgagagggagagtgtgctatgtacttctaagattca 821065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 539 - 652
Target Start/End: Complemental strand, 22245993 - 22245880
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||| |||||||||||||||||||| |  ||||||| ||||||||||  || ||||| |||||||| || |||||| ||| ||||||||    
T  22245993 taattaaggaaacaattgacttcacgacttaaatcagctcagtaactccattctcctctcaccttggtgaggtagacactgatagggctacccgtttgta 22245894  T
Q  639 gaactactgagagg 652  Q
    ||||||||||||||    
T  22245893 gaactactgagagg 22245880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 539 - 645
Target Start/End: Original strand, 13907671 - 13907777
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||  ||| ||| |||||| | | | ||||||    
T  13907671 taattaaggaaacaagtgacttcacgacttaaatcaacctagtaactccattctcttcgcaccttggtaagtaagatgctgatagggcttcccatttgta 13907770  T
Q  639 gaactac 645  Q
    |||||||    
T  13907771 gaactac 13907777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 539 - 703
Target Start/End: Complemental strand, 6290513 - 6290350
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| |||| |||||||||||| ||||||||||| |  | |||||||||||| |||| || ||||||||||||||||| |||| | |    |||||||    
T  6290513 taattaaggaaccaagtgacttcatgacttaaatcagcacaataacttcattctactcgcaccttggtaaggtagacgctgatagagatgtctgtttgta 6290414  T
Q  639 gaactactgagagggagagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    |||||||  ||| ||||||| |  ||||  |||||||||||| |||| |||| ||||||||||||    
T  6290413 gaactaccaagaaggagagtatgttatgcacttctaagattc-atagatgagagaacctttagga 6290350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 546 - 681
Target Start/End: Original strand, 27853945 - 27854079
Alignment:
Q  546 ggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactac 645  Q
    ||||||| || |||||||||||||||||| |||||||||| || ||  ||   || ||| ||||||||||||| |||||| | | ||||||||||||||     
T  27853945 ggaaacaggttacttcacgacttaaatcagcctagtaactccactcatctttcaccttgataaggtagacgctaatagggcttctcgtttgtagaactat 27854044  T
Q  646 tgagagggagagtgtcatatgttcttctaagattca 681  Q
     |||| |||||||||  ||||| |||||||||||||    
T  27854045 cgaga-ggagagtgtgttatgtgcttctaagattca 27854079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 588 - 660
Target Start/End: Original strand, 3115865 - 3115937
Alignment:
Q  588 attctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||||| | |||||||||||||| || ||| || | | ||||||||||||||| ||||||||||||||    
T  3115865 attctcctcgacccttggtaaggtagacactgataaggctgcccgtttgtagaactaccgagagggagagtgt 3115937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 588 - 660
Target Start/End: Complemental strand, 5508987 - 5508915
Alignment:
Q  588 attctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgt 660  Q
    ||||||||||| ||||||||||||| ||||| |||||| | |  |||||||||||||| |||||| |||||||    
T  5508987 attctcctcgacctttggtaaggtacacgctcatagggcttcctgtttgtagaactaccgagaggtagagtgt 5508915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 555 - 703
Target Start/End: Complemental strand, 21018525 - 21018384
Alignment:
Q  555 tgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagaggga 654  Q
    ||||||||||||||||||||||| | ||||| ||||||| ||  ||    ||||||||||| |  |||||||| | |||||||||||| ||| ||| |||    
T  21018525 tgacttcacgacttaaatcaacccaataactccattctcttc--ac----gtaaggtagacacggatagggttgcccgtttgtagaaccacttagaagga 21018432  T
Q  655 gagtgtcatatgttcttctaagattcaataggtgagggaacctttagga 703  Q
    ||||||  ||||| ||| |||||||| |||| |||| ||||||| ||||    
T  21018431 gagtgtgttatgtgcttgtaagattc-atagatgagagaaccttaagga 21018384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 587 - 657
Target Start/End: Complemental strand, 20430406 - 20430336
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    ||||||| |||| ||||||||||||||||||| ||||||   | ||||||||||| ||||||||| |||||    
T  20430406 cattctcttcgacctttggtaaggtagacgctgatagggcatcccgtttgtagaattactgagagagagag 20430336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 477 - 585
Target Start/End: Complemental strand, 20885927 - 20885818
Alignment:
Q  477 atttagggaggtgacatacctaatactagtgtatacatgtcttaatcaggaagtaactaatc-taattagggaaacaagtgacttcacgacttaaatcaa 575  Q
    ||||||||||||||||||||||||| |  || |||  |  || ||  |||||||||||| |  |||||| |||||||||||||||||||||| ||||||     
T  20885927 atttagggaggtgacatacctaatattgatgcatattttcctgaaaaaggaagtaactagtaataattaaggaaacaagtgacttcacgactgaaatcag 20885828  T
Q  576 cctagtaact 585  Q
    || |||||||    
T  20885827 cccagtaact 20885818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 27853699 - 27853756
Alignment:
Q  411 tgctatttaattttactatcgt-gcgtaagatttgtctcctctgaaacataaccctga 467  Q
    ||||||||||||||||| | || ||||||||||||||||||||||| |||||| ||||    
T  27853699 tgctatttaattttactgttgttgcgtaagatttgtctcctctgaagcataactctga 27853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 555 - 595
Target Start/End: Original strand, 21019326 - 21019366
Alignment:
Q  555 tgacttcacgacttaaatcaacctagtaacttcattctcct 595  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  21019326 tgacttcatgacttaactcaacctagtaacttcattctcct 21019366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 539 - 614
Target Start/End: Complemental strand, 314757 - 314682
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtaga 614  Q
    |||||| ||||||||||||||||| ||||||||| |  | ||||||| |||||| |||| || || ||||||||||    
T  314757 taattaaggaaacaagtgacttcatgacttaaattagtccagtaactccattcttctcgcaccttcgtaaggtaga 314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 807 - 861
Target Start/End: Original strand, 23055849 - 23055903
Alignment:
Q  807 gttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccc 861  Q
    ||||||||| ||| |||||| | |||||||| ||| |||||||||||||||||||    
T  23055849 gttgcaactgacagctggagagcaatgaactgatacctctgagagagtaagaccc 23055903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 13907457 - 13907490
Alignment:
Q  435 gtaagatttgtctcctctgaaacataaccctgat 468  Q
    ||||||||||||||||||||||||||||| ||||    
T  13907457 gtaagatttgtctcctctgaaacataaccatgat 13907490  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 21019168 - 21019201
Alignment:
Q  413 ctatttaattttactatcgtgcgtaagatttgtc 446  Q
    ||||||||||||||| ||||||||||||||||||    
T  21019168 ctatttaattttactttcgtgcgtaagatttgtc 21019201  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 23055396 - 23055449
Alignment:
Q  402 tttttcgaatgctatttaattttactatcgtgcgtaagatttgtctcctctgaa 455  Q
    ||||||||||  |||||||||||||| |||| | ||||||||||||||| ||||    
T  23055396 tttttcgaatattatttaattttactgtcgtacataagatttgtctcctttgaa 23055449  T

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Target: scaffold0128 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 587 - 703
Target Start/End: Original strand, 44 - 159
Alignment:
Q  587 cattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagagtgtcatatgttcttctaagattcaatagg 686  Q
    ||||||||||  || |||||||||||||| || |||||| | | ||||||||||||||| ||||||| ||||||  ||||| |||||||||||| ||||     
T  44 cattctcctcacaccttggtaaggtagacactaatagggcttcccgtttgtagaactaccgagagggggagtgtgctatgtacttctaagattc-ataga 142  T
Q  687 tgagggaacctttagga 703  Q
    |||||||| ||||||||    
T  143 tgagggaaactttagga 159  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 539 - 660
Target Start/End: Original strand, 183888 - 184009
Alignment:
Q  539 taattagggaaacaagtgacttcacgacttaaatcaacctagtaacttcattctcctcgaactttggtaaggtagacgcttatagggttacacgtttgta 638  Q
    |||||| ||||||||||||||||| ||||||||||| || ||||||| |||| |||||  || || |||||  ||||| | |||||| | |  |||| ||    
T  183888 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaactccattttcctcacaccttagtaagaaagacgttgatagggctgcctgtttata 183987  T
Q  639 gaactactgagagggagagtgt 660  Q
    ||||||| ||||||||||||||    
T  183988 gaactaccgagagggagagtgt 184009  T

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Target: scaffold0019; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 414 - 501
Target Start/End: Complemental strand, 27423 - 27337
Alignment:
Q  414 tatttaattttactatcgtgcgtaagatttgtctcctctgaaacataaccctgatatataggaatttagggaggtgaca-tacctaata 501  Q
    |||||| ||||||| ||| | ||||||||||||||||| ||| ||||||||||  | ||||| | |||||||||||||| |||||||||    
T  27423 tatttagttttactgtcgcgtgtaagatttgtctcctcagaagcataaccctg--acataggcacttagggaggtgacattacctaata 27337  T

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Target: scaffold0032 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 782 - 899
Target Start/End: Original strand, 71273 - 71388
Alignment:
Q  782 aacccgtagcacctccagtgtaatggttgcaactaacaactggaggggaatgaactaataactctgagagagtaagaccccacgcgtacatacctgtggt 881  Q
    ||||||||| | |||  |||||| |||||||||| | | |||||||| |||||||   || |||||||||||||||||||||| ||||| ||| ||||      
T  71273 aacccgtaggaactctggtgtaaaggttgcaactgatagctggagggcaatgaacccttacctctgagagagtaagaccccacacgtacctacatgtg-- 71370  T
Q  882 ggatcagcaggtgcaact 899  Q
     ||||| |||||||||||    
T  71371 tgatcaacaggtgcaact 71388  T

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Target: scaffold0622 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 657
Target Start/End: Original strand, 1118 - 1171
Alignment:
Q  604 ggtaaggtagacgcttatagggttacacgtttgtagaactactgagagggagag 657  Q
    |||||||| |||||| |||||| | | ||||||||||||||||||||| |||||    
T  1118 ggtaaggtggacgctgatagggatgcccgtttgtagaactactgagagagagag 1171  T

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Target: scaffold0394 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 10903 - 10940
Alignment:
Q  418 taattttactatcgtgcgtaagatttgtctcctctgaa 455  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  10903 taattttactatcgtgcgtaagatttgtcgcatctgaa 10940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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