View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5350-Insertion-2 (Length: 782)

Name: NF5350-Insertion-2
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5350-Insertion-2
NF5350-Insertion-2
[»] chr1 (1 HSPs)
chr1 (127-752)||(17432035-17432648)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 127 - 752
Target Start/End: Complemental strand, 17432648 - 17432035
Alignment:
Q  127 tagtgtatattttatgccttagagttctttcttttttagtgttgttgttttagttaggcaggtataaacacatgtctcctatattaatcgatacacaaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432648 tagtgtatattttatgccttagagttctttcttttttagtgttgttgttttagttaggcaggtataaacacatgtctcctatattaatcgatacacaaaa 17432549  T
Q  227 agatcatcgtgaatttagctcagttgataaagataatgatatacgcaaggtttgagatttaaatctcagacaccaccaaataaagttgatacacaaaaag 326  Q
    ||||| |||||||||||||||||||| |||| |||||| |||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  17432548 agatcctcgtgaatttagctcagttggtaaaaataatggtatatgcaaggtttgagagttaaatcccggacaccaccaaataaagttgatacacaaaaag 17432449  T
Q  327 gatagcgtacactttgatagaaggaaaacaacatattgtataatagagaaaagtttggatagaagttgagaccatagattttagcatgatagttaagtaa 426  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432448 gatagtgtacactttgatagaaggaaaacaacatattgtataatagagaaaggtttggatagaagttgagaccatagattttagcatgatagttaagtaa 17432349  T
Q  427 ttttcgcaacatattcttttcttaaaggcatagtacacaaaagtttagatagtcatttcgagaataatgttttcgaaaaaatgtgaaagaggttggaaaa 526  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432348 ttttcgcaacatattctttt----------tagtacacaaaagtttagatagtcatttcgagaataatgttttcgaaaaaatgtgaaagaggttggaaaa 17432259  T
Q  527 acgttgtctattataggtggagatttaactattgtaaatggtagaataggatattttcaatgttggaaaatgtgaaaagatgttagaatgcatgcaaata 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17432258 acgttgtctattataggtggagatttaactattgtaaatggtagaata-gatattttcaatgttggaaaatgtgaaaagatgttagaatgcatgcaaata 17432160  T
Q  627 ggttgtaaaatg--ttgnnnnnnnaaggaaataggttggaaaatgttaaagtatcattttataagtgtaacgttttttgggaaccacaaaaagagggata 724  Q
    ||||||||||||  ||        |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  17432159 ggttgtaaaatgtttttttttttgaaggaaataggttggaaaatgttaaagtatcattttataagtgtaacg-ttttcgggaaccacaaaaaga-ggata 17432062  T
Q  725 agaaaacgtttttcatttgatatactcc 752  Q
    || |||||||||||||||||||||||||    
T  17432061 ag-aaacgtttttcatttgatatactcc 17432035  T

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