View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5350-Insertion-4 (Length: 451)
Name: NF5350-Insertion-4
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5350-Insertion-4 |
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| [»] chr6 (9 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 155 - 451
Target Start/End: Original strand, 11165352 - 11165648
Alignment:
| Q |
155 |
ttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
254 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
11165451 |
T |
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| Q |
255 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttct |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11165452 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttct |
11165551 |
T |
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| Q |
355 |
cagcttctctgatcatcctatcaacttcctcctttggcagccttcctttgtaaggattttctattctaacttgcttgatattcacatttataacaat |
451 |
Q |
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| T |
11165552 |
cagcttctcttatcatcctatcaacttcctcctttgacagccttcctttgtaaggattttctattctaacttgcttgattttcacatttataacaat |
11165648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 118 - 405
Target Start/End: Original strand, 11208364 - 11208651
Alignment:
| Q |
118 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
217 |
Q |
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| T |
11208364 |
cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt |
11208463 |
T |
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| Q |
218 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatttctcgcttcaacc |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
11208464 |
ttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgattcaacc |
11208563 |
T |
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| Q |
318 |
ttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaacttcctcctttggcagccttcctttgt |
405 |
Q |
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| T |
11208564 |
ttcttcctatgcctcatgtcttcatctttgtatttctcagcttcactgatcatcctctcaatttcctcctttgacagtcttcccttgt |
11208651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 118 - 405
Target Start/End: Original strand, 11169542 - 11169829
Alignment:
| Q |
118 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
217 |
Q |
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|||||||||| ||| | |||||| |||||| || |||||||||||| || |||| | |||||||||||||||||||||||| ||| |||||||| || |
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| T |
11169542 |
cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt |
11169641 |
T |
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| Q |
218 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatttctcgcttcaacc |
317 |
Q |
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| |||||||||||||||||| ||||||||||| ||| |||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11169642 |
tgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctcatattgtatgcgtacatctctagtgcatttctcgcttcaacc |
11169741 |
T |
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| Q |
318 |
ttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaacttcctcctttggcagccttcctttgt |
405 |
Q |
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| T |
11169742 |
ttcttcctatgcctcatgtcttcatctttgtatttgtcagcttctcttatcatcctatcaacttcctcctgtgacagtcttcccttgt |
11169829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 118 - 405
Target Start/End: Original strand, 11274926 - 11275213
Alignment:
| Q |
118 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
217 |
Q |
| |
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|||||||||| ||| | |||||| ||||||| || |||||||||||| || |||| | |||||||||||||||||||||||| ||| |||||||| || |
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| T |
11274926 |
cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt |
11275025 |
T |
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| Q |
218 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatttctcgcttcaacc |
317 |
Q |
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||||||||||||| | |||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11275026 |
ttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc |
11275125 |
T |
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| Q |
318 |
ttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaacttcctcctttggcagccttcctttgt |
405 |
Q |
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|| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||| ||| ||||| |||| |
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| T |
11275126 |
tttttcctatgcctaatgtcttcatctttgtacttctcagcttcattgatcatcctctcaatttcctcttttgacagtcttcccttgt |
11275213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 405
Target Start/End: Original strand, 11155325 - 11155550
Alignment:
| Q |
180 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
279 |
Q |
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|||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||| || | |||| ||| ||||||||| | || |||||| | |
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| T |
11155325 |
agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgt |
11155424 |
T |
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| Q |
280 |
tgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaac |
379 |
Q |
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| T |
11155425 |
tgtatgcatacgtctctagtacaactctcgcttctaccttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcttcctctcaat |
11155524 |
T |
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| Q |
380 |
ttcctcctttggcagccttcctttgt |
405 |
Q |
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| T |
11155525 |
atcctcctttgacaaccttcccttgt |
11155550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 180 - 390
Target Start/End: Original strand, 11195772 - 11195982
Alignment:
| Q |
180 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
279 |
Q |
| |
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|||||| | ||||||||||||| ||| |||||||| |||||||||||||||||||||||| || | |||| || ||||||||| | || |||||| | |
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| T |
11195772 |
agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgt |
11195871 |
T |
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| Q |
280 |
tgtatgcgtacctctctagttcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaac |
379 |
Q |
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| T |
11195872 |
tgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctttgatcatcctctcaat |
11195971 |
T |
|
| Q |
380 |
ttcctcctttg |
390 |
Q |
| |
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||||||||||| |
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| T |
11195972 |
ttcctcctttg |
11195982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 11167867 - 11167913
Alignment:
| Q |
405 |
taaggattttctattctaacttgcttgatattcacatttataacaat |
451 |
Q |
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| T |
11167867 |
taaggattttctattctaacttgcttgattttcacatttataacaat |
11167913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 11132164 - 11132268
Alignment:
| Q |
301 |
catttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctctgatcatcctatcaacttcctcctttggcagccttcc |
400 |
Q |
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||||||| | ||| ||||||||||||| | || |||||||||| ||||| |||||||||||| ||||||||| |||| || || |||| ||||||||| |
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| T |
11132164 |
catttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctcagcttcttcgatcatcctctcaatctcttcttttgacagccttcc |
11132263 |
T |
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| Q |
401 |
tttgt |
405 |
Q |
| |
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|||| |
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| T |
11132264 |
cttgt |
11132268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 11242198 - 11242016
Alignment:
| Q |
118 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
217 |
Q |
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|||||||||| ||| | |||||| ||||||| || |||||||| || || |||| | |||||||| | |||||||||| || ||| ||||| || || |
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| T |
11242198 |
cacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgctttattaatctt |
11242100 |
T |
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| Q |
218 |
ttccttttct--tttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
299 |
Q |
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|||||||| | ||| ||||||||||||||| || ||| ||||||||||| || ||| || |||||||| ||| ||| |||| |
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| T |
11242099 |
ttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttctttagt |
11242016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 13623298 - 13623344
Alignment:
| Q |
405 |
taaggattttctattctaacttgcttgatattcacatttataacaat |
451 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13623298 |
taaggattttctattctaacttgcttgattttcacatttataacaat |
13623344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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