View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5350-Insertion-5 (Length: 412)
Name: NF5350-Insertion-5
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5350-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 204 - 407
Target Start/End: Original strand, 12204209 - 12204408
Alignment:
| Q |
204 |
ttgatgttgttgagaaaaggaaacaacaaaggtttgaagagagagtaaaagtgttgtggaagaccctccaaaatcttttatacctctccataaaagtgtt |
303 |
Q |
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| T |
12204209 |
ttgatgttgttgagaaaaggaaacaacaaaggtttgaagagagagtaaaagtgttgtggaagaccctccaaaatcttttatacctctccataaaagtgtt |
12204308 |
T |
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| Q |
304 |
tgaaaacccaaaagttannnnnnnnccatacaacagttcacacatagactccgcacttcccaaacagagaaacgatcaagattaaagctatgaccaatcc |
403 |
Q |
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| T |
12204309 |
cgaaaactc--aattta--ttttttctatacaacatttcacacatagactccgcgcttcccaaagagagaaacgatcaagattaaagctatgaccaatcc |
12204404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 12204074 - 12204151
Alignment:
| Q |
69 |
atcaccacccacaaacctaacaaaagcctaaatagttctaaagtgaaggcaaaaagataataagcaagcataacattc |
146 |
Q |
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| T |
12204074 |
atcaccacccgcaaacctaacaaaagcctaaatatttctaaaatgaaggcaaaaagacaataaacaagcataacattc |
12204151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4884412 - 4884353
Alignment:
| Q |
18 |
tagtttgtattacttttaaccaaaatcaattttacagaatcagaatcaactatcaccacc |
77 |
Q |
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| T |
4884412 |
tagtttgaattacttttaaccaaaatcaattttacagaatcaaaatcaactatcaccacc |
4884353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 4645940 - 4645973
Alignment:
| Q |
26 |
attacttttaaccaaaatcaattttacagaatca |
59 |
Q |
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| T |
4645940 |
attacttttaaccaaaataaattttacagaatca |
4645973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 4074260 - 4074220
Alignment:
| Q |
18 |
tagtttgtattacttttaaccaaaatcaattttacagaatc |
58 |
Q |
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| T |
4074260 |
tagtttgaatcacttttaaccaaaatcaattttaaagaatc |
4074220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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