View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5350_high_1 (Length: 450)
Name: NF5350_high_1
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5350_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 34757779 - 34758199
Alignment:
| Q |
13 |
tcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttcaattggcatattctcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34757779 |
tcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttcaattggcatattctcaa |
34757878 |
T |
|
| Q |
113 |
taaactcgtgagcttcattcaaccgaccagcacacccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
34757879 |
taaactcgtgagcttcattcaaccgaccagcacacccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccctcatcga |
34757978 |
T |
|
| Q |
213 |
ttcaaactgcattaaaccttcttccacaccgtcgaccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctc |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34757979 |
ttcaaa-tgcattaaaccttcttccacaccgtcgaccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctc |
34758077 |
T |
|
| Q |
313 |
atctgcttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34758078 |
atctgcttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttat |
34758177 |
T |
|
| Q |
413 |
caaacactttccgcgcatcctt |
434 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34758178 |
caaacactttccgcgcatcctt |
34758199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 34615230 - 34615651
Alignment:
| Q |
13 |
tcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttcaattggcatattctcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34615230 |
tcatcagcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcgaagagtctcccaaagctcaactccggcttcaattggcatattctcaa |
34615329 |
T |
|
| Q |
113 |
taaactcgtgagcttcattcaaccgaccagcacacccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcga |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34615330 |
taaactcgtgagcttcatccaaccgaccagcacacccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcga |
34615429 |
T |
|
| Q |
213 |
ttcaaactgcattaaaccttcttccacaccgtcgaccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
34615430 |
ttcaaactgcattaaaccttcttccacaccgtcaaccaatgcacacacagccaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgcctc |
34615529 |
T |
|
| Q |
313 |
atctgcttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34615530 |
atctgcttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattcaacgaaccgacatttctgtcaggcattttat |
34615629 |
T |
|
| Q |
413 |
caaacactttccgcgcatcctt |
434 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34615630 |
caaacactttccgcgcatcctt |
34615651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 34742672 - 34743088
Alignment:
| Q |
18 |
agcacaatcctcgcgttctaagtctccatgaattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttcaattggcatattctcaataaac |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
34742672 |
agcacgatcctcgcgttctaagtctccataaattctcgcaaaatttcgaagagtctcccaaacatcaaccccggcttcaattggcatattctcaataaac |
34742771 |
T |
|
| Q |
118 |
tcgtgagcttcattcaaccgaccagcacacccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcgattcaa |
217 |
Q |
| |
|
|| |||||||||| |||| |||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34742772 |
tcctgagcttcatccaacggaccagcacatccaaaaatattatcaacccccaaataatgctccatccctggaacaattccatactccttcatcgattcaa |
34742871 |
T |
|
| Q |
218 |
actgcattaaaccttcttccacaccgtcgaccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
34742872 |
actgcattaaaccttcttccacaccgtcgaccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgcctcatctg |
34742971 |
T |
|
| Q |
318 |
cttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34742972 |
cttaaaaaccaacaaaccatcaatccctaaaccattcacattatatccaccaatcatcaaattcaacgaaccgacatttctgtcaggcattttatcaaac |
34743071 |
T |
|
| Q |
418 |
actttccgcgcatcctt |
434 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34743072 |
actttccgcgcatcctt |
34743088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 48 - 434
Target Start/End: Original strand, 11544097 - 11544483
Alignment:
| Q |
48 |
aattctcgcaaaatttcaaagagtctcccaaatctcaactccggcttcaattggcatattctcaataaactcgtgagcttcattcaaccgaccagcacac |
147 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11544097 |
aattgtcgcaaaatttcgaagagtctcccaaatctcaactccggcttcaattggcatattctcaataaactcgtgagcttcatccaaccgaccagcacac |
11544196 |
T |
|
| Q |
148 |
ccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcgattcaaactgcattaaaccttcttccacaccgtcga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11544197 |
ccgaaaatattaacaactcccaaataatgctccatccctggaacaattccatactccttcatcgattcaaactgcattaaaccttcttccacaccgtcaa |
11544296 |
T |
|
| Q |
248 |
ccaacgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaa |
347 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544297 |
ccaacgcacacacagtcaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgactcatctgcttaaaaaccaacaaaccatcaatccctaa |
11544396 |
T |
|
| Q |
348 |
accattcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatcctt |
434 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544397 |
accattcacattatatccacaaatcatcaaattcaacgaaccgacatttctatcaggcattttatcaaacactttccgcgcatcctt |
11544483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 11542685 - 11542723
Alignment:
| Q |
13 |
tcatcagcacaatcctcgcgttctaagtctccatgaatt |
51 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11542685 |
tcatcagcacaatcctcacgttctaagtctccatgaatt |
11542723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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