View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5350_high_5 (Length: 288)
Name: NF5350_high_5
Description: NF5350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5350_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 2051284 - 2051051
Alignment:
| Q |
16 |
atataaagttccaattcaaataagagcaataatatattagtagagattgtaatgagcttataaatagtgacaaaagtagtattaatatgtggatgtttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051284 |
atataaagttccaattcaaataagagcaataatatattagtaga--ttgtaatgagcttataaatagtgacaaaagtagtattaatatgtggatgtttgg |
2051187 |
T |
|
| Q |
116 |
aattgcaggaagcttttgcttcggatgtaaagatgaaggcaacattacgagatccagacacagatgcatggaaaacactttgtctcacatttcttaaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051186 |
aattgcaggaagcttttgcttcggatgtaaagatgaaggcaacattacgagatccagacacagatgcatggaaaacactttgtctcacatttcttaaagg |
2051087 |
T |
|
| Q |
216 |
tcaattatgacctagtaacaaaatattctgctgtaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2051086 |
tcaattatgacctagtaacaaaatattctgctgtaa |
2051051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University